BQ623234

Overview
NameBQ623234
Unique NameBQ623234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623234 vs. ExPASy Swiss-Prot
Match: AIFM2_XENLA (Apoptosis-inducing factor 2 OS=Xenopus laevis GN=aifm2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.860e-16
Identity = 48/142 (33.80%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   10 DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMTTYRPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMG 435
            + +N D    C G  V S   +   L D +   G L+V++ L+V+G +N++A+GD   I E K  + A  HA+VAA N++  ++G+    + +Y P +   ++S+GR D V Q        C   + KSRD+FV K+ K+MG
Sbjct:  232 EVVNCDLVLCCIGLKVSSSSYRSA-LGDKMAEDGSLIVNDYLQVQGHENVYAVGDCAYINEPKMAYYAGIHARVAATNVRNSLIGK---SLKSYIPGALSMLLSMGRNDGVGQFNGYYLGRCFVTMAKSRDIFVSKSWKEMG 369          
BLAST of BQ623234 vs. ExPASy Swiss-Prot
Match: AIFM2_XENTR (Apoptosis-inducing factor 2 OS=Xenopus tropicalis GN=aifm2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.996e-15
Identity = 50/147 (34.01%), Postives = 78/147 (53.06%), Query Frame = 1
Query:   10 DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMTTYRPHSAIAIVSLGRKDAVAQLPFMTTIGCVPG-----LIKSRDLFVGKTRKQMG 435
            + +  D    CTG  + S         D L   G L+V++ L+V+G  N++A+GD   I E K  + A  HA+VAA N++  ++G+    + TY+P +   ++S+GR D V Q       GC  G     + KSRD+FV K+ K+MG
Sbjct:  232 EVVTCDLVLCCTGYKISSSSYSSAF-GDKLAEDGALIVNDYLQVQGHANVYAVGDCAYINEPKMAYYAGIHARVAATNVRNSLIGK---SLKTYKPGALSMLLSMGRNDGVGQFN-----GCYLGRFFVTMAKSRDIFVSKSWKEMG 369          
BLAST of BQ623234 vs. ExPASy Swiss-Prot
Match: AIFM2_HUMAN (Apoptosis-inducing factor 2 OS=Homo sapiens GN=AIFM2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.207e-14
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 1
Query:    7 GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMTTYRPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEP 444
            G  +  +   LCTG  + S   +    +  L + G L V+E+L+V+G  N++AIGD  D+R  K  +LA  HA +A  N   ++   ++  +  Y+P +   ++S+GR D V Q+        +  L KSRDLFV  + K M   P
Sbjct:  231 GTEVATNLVILCTGIKINSSAYRKAF-ESRLASSGALRVNEHLQVEGHSNVYAIGDCADVRTPKMAYLAGLHANIAVAN---IVNSVKQRPLQAYKPGALTFLLSMGRNDGVGQISGFYVGRLMVRLTKSRDLFVSTSWKTMRQSP 372          
BLAST of BQ623234 vs. ExPASy Swiss-Prot
Match: AIFM2_BOVIN (Apoptosis-inducing factor 2 OS=Bos taurus GN=AIFM2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 49/146 (33.56%), Postives = 76/146 (52.05%), Query Frame = 1
Query:    7 GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMTTYRPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEP 444
            G  ++A+   +C G  + S   +     D L ++G L V+E L+V+G  +I+AIGD  D+RE K  + A  HA VA  N+   M   ++  + TY+P S   ++++GR D V Q+        +  L KSRDL V  + K M   P
Sbjct:  231 GTEVDANLVIVCNGIKINSAAYRSAF-GDRLASNGALRVNEYLQVEGYSHIYAIGDCADVREPKMAYHASLHANVAVANIVNSM---KQRPLKTYKPGSLTFLLAMGRNDGVGQISGFYVGRLMVRLAKSRDLLVSTSWKTMKQSP 372          
BLAST of BQ623234 vs. ExPASy Swiss-Prot
Match: AIFM2_TAEGU (Apoptosis-inducing factor 2 OS=Taeniopygia guttata GN=AIFM2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 47/143 (32.87%), Postives = 74/143 (51.75%), Query Frame = 1
Query:    7 GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMTTYRPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMG 435
            G  +  D   LCTG  + S         D + + G L V+++L+++G +NI+AIGD  D++E K  + A  HA V   N   ++    +  + TY P S   ++S+GR D V Q+        +  + KSRDLFV K+ + MG
Sbjct:  230 GTEVVVDMVVLCTGIKINSSAYA-AAFGDKMASDGALKVNKHLQLEGYENIYAIGDCADLKEPKMAYHAGLHANVVVTN---IINSLTQKPLKTYEPGSLTFLLSMGRNDGVGQVNGYYVGRLLVTIAKSRDLFVSKSWRTMG 368          
BLAST of BQ623234 vs. ExPASy Swiss-Prot
Match: AIFM2_MOUSE (Apoptosis-inducing factor 2 OS=Mus musculus GN=Aifm2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 45/146 (30.82%), Postives = 72/146 (49.32%), Query Frame = 1
Query:    7 GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMTTYRPHSAIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEP 444
            G  +  +   +C G  + S   +    +  L ++G L V+E L+V+G  NI+AIGD  D +E K  + A  HA VA  N+   M   ++  +  Y+P +   ++S+GR D V Q+        +  L KSRDL +  + K M   P
Sbjct:  231 GTEVATNMVIVCNGIKINSSAYRSAF-ESRLASNGALKVNEFLQVEGYSNIYAIGDCADTKEPKMAYHAGLHANVAVANIVNSM---KQRPLKAYKPGALTFLLSMGRNDGVGQISGFYVGRLMVRLAKSRDLLISTSWKTMRQSP 372          
BLAST of BQ623234 vs. ExPASy Swiss-Prot
Match: AIFB_DICDI (Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum GN=aifB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 38/113 (33.63%), Postives = 61/113 (53.98%), Query Frame = 1
Query:   97 LDTHGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMTTYRPHSAIAIVSLGRKDAVAQL-PFMTTIGCVPGLIKSRDLFVGKTRKQM 432
            ++  G L V+ + +V+G  N+FAIGD TD  E K  + A  HA +AAK +  L  G+   K+  ++    I  +SLG +D + Q+ P M        +IKS+ LF+ +   Q+
Sbjct:  267 INESGQLKVNLSCQVQGYNNVFAIGDCTDFDEFKTAYNAGYHAAIAAKAIDALSKGKSNDKLAKHKVSGPILSLSLGPQDGITQISPTMCLGSFATKMIKSKSLFIDRYISQL 379          
The following BLAST results are available for this feature:
BLAST of BQ623234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
AIFM2_XENLA6.860e-1633.80Apoptosis-inducing factor 2 OS=Xenopus laevis GN=a... [more]
AIFM2_XENTR1.996e-1534.01Apoptosis-inducing factor 2 OS=Xenopus tropicalis ... [more]
AIFM2_HUMAN2.207e-1432.19Apoptosis-inducing factor 2 OS=Homo sapiens GN=AIF... [more]
AIFM2_BOVIN3.764e-1433.56Apoptosis-inducing factor 2 OS=Bos taurus GN=AIFM2... [more]
AIFM2_TAEGU1.868e-1332.87Apoptosis-inducing factor 2 OS=Taeniopygia guttata... [more]
AIFM2_MOUSE6.009e-1230.82Apoptosis-inducing factor 2 OS=Mus musculus GN=Aif... [more]
AIFB_DICDI3.895e-1133.63Apoptosis-inducing factor homolog B OS=Dictyosteli... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00325 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00325 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623234 ID=BQ623234; Name=BQ623234; organism=Citrus sinensis; type=EST; length=618bp
TCAACAGGAGATACCATAAATGCAGATTGCCACTTCCTATGCACAGGAAA
ACCAGTAGGTTCAGATTGGCTTAAGGATACTATATTGAAGGATAGTTTGG
ATACTCATGGAATGCTAATGGTTGATGAGAATTTAAGAGTGAAGGGTCAG
AAGAACATATTTGCAATTGGAGATATTACTGATATTCGAGAAATTAAACA
GGGGTTTTTAGCACAGAAACATGCTCAAGTGGCTGCAAAGAACTTGAAGG
TATTGATGGTGGGAGAAAGAGAAAGCAAAATGACAACTTATCGGCCACAT
TCAGCAATTGCAATTGTTTCCCTGGGAAGGAAAGACGCTGTGGCACAGTT
GCCATTTATGACCACCATTGGTTGTGTTCCTGGCTTAATCAAATCTAGAG
ACTTATTTGTTGGGAAAACAAGGAAGCAAATGGGCTTAGAACCCAGATGT
TGCACATGCTTAAGAAAGTGAGTTCAGTTCGTTAGACATCCTACAGGTGT
AACATTCTCAATTTCTTTGTTTCATTTAATATTGTTGTACTGTTTATTAA
ACTTTATTGTTCCTGGGTTTGCTTGGGCATTTGTATTTTTTAAGGGTTGG
GTGTGATTTGATTGTATA
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