BQ623407

Overview
NameBQ623407
Unique NameBQ623407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623407_ssr23 microsatellite BQ623407_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig199 contig Csv1_Contig199:42..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623407 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.264e-58
Identity = 100/158 (63.29%), Postives = 118/158 (74.68%), Query Frame = 2
Query:   38 LVSREARTSIARRNVAPCSVTLPATS---RKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQG-----TQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLSKEDVKVSVEE 487
            +VS  +RT+  +   AP SV  P +    RK A RL A   QA G+NKDTSVDVHV++ NQG     + VERRPRR ALD+SPFGL+DP  P RTMRQM+DTMDRL EDTM FPG SR  G G++R PWDIK++ENEIKMRFDMPGLSKE+VKVSVE+
Sbjct:   18 VVSATSRTNNKKTTTAPFSVCFPYSKCSVRKPASRLVA---QATGDNKDTSVDVHVSNNNQGGNNQGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVED 171          

HSP 2 Score: 56.9954 bits (136), Expect = 6.264e-58
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 1
Query:  505 KESTGQKKLGGASFSSYDTRLQLPDNCEKDKGKAELKNGVL 627
            KE +G+    G ++SSYDTRL LPDN +KDK KAELKNGVL
Sbjct:  182 KEESGKDDSWGRNYSSYDTRLSLPDNVDKDKVKAELKNGVL 222          

HSP 3 Score: 26.1794 bits (56), Expect = 6.264e-58
Identity = 10/16 (62.50%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  483 KNEVLVIKGEHRAEEA 530
            +++VLVIKGEH+ EE+
Sbjct:  170 EDDVLVIKGEHKKEES 185          
BLAST of BQ623407 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.108e-55
Identity = 100/158 (63.29%), Postives = 118/158 (74.68%), Query Frame = 2
Query:   35 PLVSREARTSIARRN----VAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSG----NQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLSKEDVKVSVE 484
            PLVS  +    ++ N     APCSV +P+  R+   RL A   +A G+NKDTSVDVH +S     NQGT VERRP R ALD+SPFG++DP  P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGLSKEDVKVSVE
Sbjct:   10 PLVSNVSVGGTSKINNNKVSAPCSVFVPSM-RRPTTRLVA---RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVE 163          

HSP 2 Score: 53.5286 bits (127), Expect = 1.108e-55
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 1
Query:  505 KESTGQKKLG-GASFSSYDTRLQLPDNCEKDKGKAELKNGVLY 630
            KE  G+ K   G ++SSYDTRL LPDN  KDK KAELKNGVL+
Sbjct:  175 KEEDGRDKHSWGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLF 217          
BLAST of BQ623407 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 4.936e-53
Identity = 87/154 (56.49%), Postives = 118/154 (76.62%), Query Frame = 2
Query:   35 PLVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGE--NKDTSVDVH-VNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLSKEDVKVSVEE 487
            P++S++  +S+  ++  PC  + P   +     L+ VRAQAGG+  NKD SV+VH VN  +QGT VER+PRR+++DISPFGL+DP  P R+MRQMLDTMDR+ ED +  PGR+   GGG++R PW+IK+EE+EI+MRFDMPG+SKEDVKVSVE+
Sbjct:   13 PILSQKPGSSV--KSTPPCMASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVED 162          

HSP 2 Score: 56.9954 bits (136), Expect = 4.936e-53
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1
Query:  487 MKSLSLKESTGQKKLGGASFSSYDTRLQLPDNCEKDKGKAELKNGVLY 630
            +KS   +E+ G+      S+S YDTRL+LPDNCEK+K KAELK+GVLY
Sbjct:  167 IKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLY 214          
BLAST of BQ623407 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.965e-52
Identity = 78/111 (70.27%), Postives = 98/111 (88.29%), Query Frame = 2
Query:  158 GGENKDTSVDV-HVNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLSKEDVKVSVEE 487
            GG+NKD SV+V HV+ G+QGT VE++PRRTA+DISPFG++DP  P R+MRQ+LDTMDR+ EDTM FPGR+   GGG++R PWDIK+EE+EI+MRFDMPGL+KEDVKVSVE+
Sbjct:    1 GGDNKDNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVED 109          

HSP 2 Score: 60.8474 bits (146), Expect = 1.965e-52
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 1
Query:  499 SLKESTGQKKLGGASFSSYDTRLQLPDNCEKDKGKAELKNGVLY 630
            S +E  G       ++SSYDTRL+LPDNCEKDK KAELKNGVLY
Sbjct:  120 SEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLY 163          

HSP 3 Score: 21.557 bits (44), Expect = 1.965e-52
Identity = 7/15 (46.67%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  483 KNEVLVIKGEHRAEE 527
            ++++LVIKG H++E+
Sbjct:  108 EDDMLVIKGGHKSEQ 122          
BLAST of BQ623407 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.717e-47
Identity = 82/144 (56.94%), Postives = 101/144 (70.14%), Query Frame = 2
Query:   62 SIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQVERRPR-RTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLSKEDVKVSVEE 487
            S++ ++  P SV+ P   RK   R   +RAQ   EN    V      GNQG+ VE+RP+ R  +D+SPFGL+DP  P RTMRQMLDTMDR+ EDTM   GR+R G G  ++R PWDIKEEE+EIKMRFDMPGLSKEDVK+SVE+
Sbjct:   21 SVSSKSATPFSVSFP---RKIPSR---IRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVED 158          

HSP 2 Score: 57.7658 bits (138), Expect = 2.717e-47
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1
Query:  505 KESTGQKKLGGASFSSYDTRLQLPDNCEKDKGKAELKNGVLY 630
            K+        G S SSY TRLQLPDNCEKDK KAELKNGVL+
Sbjct:  168 KKEDSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLF 209          

HSP 3 Score: 21.1718 bits (43), Expect = 2.717e-47
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  483 KNEVLVIKGEHRAEEA 530
            ++ VLVIKGE + E++
Sbjct:  157 EDNVLVIKGEQKKEDS 172          
BLAST of BQ623407 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.449e-40
Identity = 80/155 (51.61%), Postives = 95/155 (61.29%), Query Frame = 2
Query:   38 LVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHV----NSGNQ-GTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLSKEDVKVSVEE 487
            LVSR   +  AR  +       PA    G        A A  EN+D SVDV V    N+GNQ G  V+RRPRR   DISPFGL+DP  P RTMRQMLDTMDRL +D + FP R       + R PWDI E+E E+KMRFDMPGLS+E+V+V VE+
Sbjct:   10 LVSR--LSPAARLPIRAWRAARPAPLSTGGRTRPLSVASAAQENRDNSVDVQVSQAQNAGNQQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVED 162          

HSP 2 Score: 43.8986 bits (102), Expect = 5.449e-40
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 1
Query:  541 SFSSYDTRLQLPDNCEKDKGKAELKNGVL 627
            S SSYD RL LPD C+K + +AELKNGVL
Sbjct:  191 SVSSYDMRLALPDECDKSQVRAELKNGVL 219          

HSP 3 Score: 21.1718 bits (43), Expect = 5.449e-40
Identity = 7/14 (50.00%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  483 KNEVLVIKGEHRAE 524
            +++ LVI+GEH+ E
Sbjct:  161 EDDALVIRGEHKKE 174          
BLAST of BQ623407 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.660e-37
Identity = 86/159 (54.09%), Postives = 106/159 (66.67%), Query Frame = 2
Query:   41 VSREARTSI--ARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKD-TSVDVHVNS--GNQ-GTQVERRPRRT-ALD-ISPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLSKEDVKVSVEE 487
            VS  AR  I  A R   P +V LP++ R      Q   A A  EN+D T+VDVHVN   GNQ G  V+RRPRR+ ALD ISPFGL+DP  P RTMRQMLDTMDR+ +D  + FP   R     G+VR PWD+ E++ E++MRFDMPGLS+E+VKV VE+
Sbjct:   11 VSPAARLPIRAAWRRARP-TVGLPSSGRAR----QLAVASAAQENRDNTAVDVHVNQDGGNQQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVED 164          

HSP 2 Score: 45.4394 bits (106), Expect = 1.660e-37
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 1
Query:  541 SFSSYDTRLQLPDNCEKDKGKAELKNGVL 627
            S SSYD RL LPD C+K K +AELKNGVL
Sbjct:  193 SVSSYDMRLALPDECDKSKVRAELKNGVL 221          
BLAST of BQ623407 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.763e-13
Identity = 54/152 (35.53%), Postives = 81/152 (53.29%), Query Frame = 2
Query:   41 VSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRA-QAGGENKDTSVDVHVNSGNQGTQVERR--PRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLSKEDVKVSVEE 487
            + R   +SIA R+    SV  PA S +  +   AVR+    GEN D            G  + RR  PRR     S   + DP  PTR++ Q+L+ MD+ +E+ +     +R  G    R  WDIKE+++ + +R DMPGLS+EDVK+++E+
Sbjct:    7 LKRLLSSSIAPRSR---SVLRPAVSSR-LFNTNAVRSYDDDGENGD------------GVDLYRRSVPRRRGDFFSD--VFDPFSPTRSVSQVLNLMDQFMENPLL--SATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQ 138          

HSP 2 Score: 27.335 bits (59), Expect = 1.763e-13
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 1
Query:  553 YDTRLQLPDNCEK-DKGKAELKNGVL 627
            + +R+ LPD   K D+ KAE+KNGVL
Sbjct:  164 FTSRIGLPDKIYKIDEIKAEMKNGVL 189          
BLAST of BQ623407 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.102e-12
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 2
Query:  269 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLSKEDVKVSVEE 487
            + DP   TR++ Q+++ MD+L+E+      R   G G  +R  WD++E+E  ++++ DMPGL+KEDVKVSVE+
Sbjct:   67 VFDPFRATRSVGQLMNLMDQLMENPFMAASR---GSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVED 136          

HSP 2 Score: 26.9498 bits (58), Expect = 1.102e-12
Identity = 14/26 (53.85%), Postives = 18/26 (69.23%), Query Frame = 1
Query:  553 YDTRLQLPDNCEKDKG-KAELKNGVL 627
            Y +R++L  N  K  G KAE+KNGVL
Sbjct:  158 YSSRIELTPNLYKIDGIKAEMKNGVL 183          
BLAST of BQ623407 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.856e-12
Identity = 30/73 (41.10%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  269 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLSKEDVKVSVEE 487
            ++DP  PTR++ QML+ MD++ E  +     +R  G   VR  W++KE+++ + +R DMPGLS+EDVK+++E+
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV--SATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQ 140          

HSP 2 Score: 27.335 bits (59), Expect = 1.856e-12
Identity = 13/26 (50.00%), Postives = 20/26 (76.92%), Query Frame = 1
Query:  553 YDTRLQLPDNCEK-DKGKAELKNGVL 627
            + +R++LP+   K D+ KAE+KNGVL
Sbjct:  164 FTSRIELPEKVYKTDEIKAEMKNGVL 189          
The following BLAST results are available for this feature:
BLAST of BQ623407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HS22C_PETHY6.264e-5863.29Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC1.108e-5563.29Small heat shock protein, chloroplastic OS=Solanum... [more]
HS21C_PEA4.936e-5356.49Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS22C_SOYBN1.965e-5270.27Small heat shock protein, chloroplastic (Fragment)... [more]
HS25P_ARATH2.717e-4756.9425.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_WHEAT5.449e-4051.61Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ1.660e-3754.0926.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23M_ARATH1.763e-1335.5323.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23C_CHERU1.102e-1242.47Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS235_ARATH1.856e-1241.1023.5 kDa heat shock protein, mitochondrial OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00498 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00498 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623407 ID=BQ623407; Name=BQ623407; organism=Citrus sinensis; type=EST; length=630bp
AATGGCTGCAACATTATCTATCTCATCATCATCACCCTTGGTATCGCGCG
AGGCCAGGACCTCAATAGCTAGGAGAAATGTGGCGCCATGCTCGGTAACC
TTACCGGCAACGTCAAGGAAAGGCGCCTATCGGCTACAAGCCGTGAGAGC
TCAGGCTGGTGGGGAGAACAAGGATACTTCGGTTGACGTCCATGTTAATT
CCGGTAACCAAGGAACCCAAGTGGAGAGGAGGCCTCGAAGAACGGCTCTC
GATATTTCACCTTTCGGTTTGATGGATCCCTCGTTTCCAACGAGGACAAT
GCGGCAGATGCTGGACACAATGGACCGTCTATTAGAGGATACGATGGCTT
TTCCGGGGAGGAGCCGGGCTGGCGGGGGAGGCCAGGTGAGAACACCGTGG
GACATCAAAGAGGAGGAAAATGAGATCAAAATGAGATTTGACATGCCTGG
ACTCTCTAAGGAGGATGTCAAAGTGTCGGTGGAAGAATGAAGTCCTTGTC
ATTAAAGGAGAGCACAGGGCAGAAGAAGCTTGGAGGTGCAAGTTTTAGCT
CTTACGATACTCGTCTCCAGCTTCCTGATAACTGTGAGAAAGATAAGGGC
AAGGCAGAGCTCAAGAATGGGGTTCTTTAC
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