BQ623447

Overview
NameBQ623447
Unique NameBQ623447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: RBX1A_ARATH (RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.445e-51
Identity = 98/148 (66.22%), Postives = 99/148 (66.89%), Query Frame = 1
Query:   73 TLDSDVPMVPVGEXXXXXXXXXXXXXXXRFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 516
            TLDSDV M+P GE               RFEIKKWSAVALWAW                                DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct:    3 TLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAW--------------------------------DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: RBX1_SALSA (RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 2.740e-45
Identity = 85/120 (70.83%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  157 RFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 516
            RFE+KKW+AVALWAW                                DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct:   21 RFEVKKWNAVALWAW--------------------------------DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: RBX1_MOUSE (RING-box protein 1 OS=Mus musculus GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.740e-45
Identity = 85/120 (70.83%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  157 RFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 516
            RFE+KKW+AVALWAW                                DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct:   21 RFEVKKWNAVALWAW--------------------------------DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: RBX1_HUMAN (RING-box protein 1 OS=Homo sapiens GN=RBX1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.740e-45
Identity = 85/120 (70.83%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  157 RFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 516
            RFE+KKW+AVALWAW                                DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct:   21 RFEVKKWNAVALWAW--------------------------------DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: RBX1A_DROME (RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.104e-45
Identity = 84/120 (70.00%), Postives = 87/120 (72.50%), Query Frame = 1
Query:  157 RFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 516
            RFE+KKW+AVALWAW                                DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EW+FQKYGH
Sbjct:   21 RFEVKKWNAVALWAW--------------------------------DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQKYGH 108          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: RBX1B_ARATH (RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.957e-44
Identity = 91/148 (61.49%), Postives = 94/148 (63.51%), Query Frame = 1
Query:   73 TLDSDVPMVPVGEXXXXXXXXXXXXXXXRFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 516
            +L+SDV M   GE               RFE+KKWSAVALWAW                                DIVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct:    3 SLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAW--------------------------------DIVVDNCAICRNHIMDLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: RBX1_CAEEL (RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.250e-42
Identity = 79/120 (65.83%), Postives = 82/120 (68.33%), Query Frame = 1
Query:  157 RFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 516
            RFE+KKWSAVALWAW                                DI VDNCAICRNHIMDLCIECQANQA+   +ECTVAWG CNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct:   23 RFEVKKWSAVALWAW--------------------------------DIQVDNCAICRNHIMDLCIECQANQAAGLKDECTVAWGNCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 110          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: RBX1_DICDI (RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.838e-41
Identity = 77/119 (64.71%), Postives = 84/119 (70.59%), Query Frame = 1
Query:  157 RFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 513
            +FE+K+W+AVALW W                                DIVVDNCAICRNHIMDLCIECQANQAS TSEECTVAWG+CNHAFHFHCISRWLK+RQVCPLDN +WEFQKYG
Sbjct:   17 KFEVKRWNAVALWIW--------------------------------DIVVDNCAICRNHIMDLCIECQANQASNTSEECTVAWGICNHAFHFHCISRWLKSRQVCPLDNRDWEFQKYG 103          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: RBX1_SCHPO (RING-box protein pip1 OS=Schizosaccharomyces pombe GN=pip1 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.466e-40
Identity = 76/120 (63.33%), Postives = 80/120 (66.67%), Query Frame = 1
Query:  157 RFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 516
            RFEIKKW+AVALW W                                DIVVDNCAICRNHIMDLCIECQAN  SA ++ECTVAWG CNHAFHFHCISRWL TR VCPLDN EWEFQ+YGH
Sbjct:   20 RFEIKKWNAVALWQW--------------------------------DIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNTRNVCPLDNREWEFQRYGH 107          
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Match: RBX1B_DROME (RING-box protein 1B OS=Drosophila melanogaster GN=Roc1b PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.037e-32
Identity = 64/119 (53.78%), Postives = 74/119 (62.18%), Query Frame = 1
Query:  157 RFEIKKWSAVALWAWGVNLTLIVFFLPFVFCN*KFS*F*ILCCLMNADIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 513
            RF +KKW A A+W W                                D+ VDNCAICRNHIM+LCIECQA+  +A  +ECTVAWG CNHAFH+HCI+RWLKTR VCPLDN EW +QKYG
Sbjct:   36 RFVVKKWVAHAMWGW--------------------------------DVAVDNCAICRNHIMNLCIECQADP-NANQDECTVAWGECNHAFHYHCIARWLKTRLVCPLDNKEWVYQKYG 121          
The following BLAST results are available for this feature:
BLAST of BQ623447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RBX1A_ARATH7.445e-5166.22RING-box protein 1a OS=Arabidopsis thaliana GN=RBX... [more]
RBX1_SALSA2.740e-4570.83RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=... [more]
RBX1_MOUSE2.740e-4570.83RING-box protein 1 OS=Mus musculus GN=Rbx1 PE=1 SV... [more]
RBX1_HUMAN2.740e-4570.83RING-box protein 1 OS=Homo sapiens GN=RBX1 PE=1 SV... [more]
RBX1A_DROME6.104e-4570.00RING-box protein 1A OS=Drosophila melanogaster GN=... [more]
RBX1B_ARATH3.957e-4461.49RING-box protein 1b OS=Arabidopsis thaliana GN=RBX... [more]
RBX1_CAEEL8.250e-4265.83RING-box protein 1 OS=Caenorhabditis elegans GN=rb... [more]
RBX1_DICDI1.838e-4164.71RING-box protein 1 OS=Dictyostelium discoideum GN=... [more]
RBX1_SCHPO3.466e-4063.33RING-box protein pip1 OS=Schizosaccharomyces pombe... [more]
RBX1B_DROME2.037e-3253.78RING-box protein 1B OS=Drosophila melanogaster GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00538 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00538 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623447 ID=BQ623447; Name=BQ623447; organism=Citrus sinensis; type=EST; length=661bp
CTTTTCTTTCTGTAGAGACCTAAACAAGCGTTCGTTGTTGGGTTTCCACA
AGAATCGAGAAAAAAATGGCGGACCTTGGACTCAGACGTACCGATGGTTC
CAGTCGGAGAGGCATCAAGCAGTGCAGGCCCTTCATCTTCCTCCAAGAAG
CCTAAACGTTTCGAGATCAAAAAGTGGAGCGCCGTCGCCCTCTGGGCTTG
GGGTGTAAACCTAACCCTAATTGTCTTCTTTTTGCCTTTTGTTTTCTGTA
ATTGAAAATTTAGCTAGTTTTAAATTTTGTGTTGCTTGATGAATGCAGAT
ATTGTTGTCGATAATTGTGCGATTTGCAGGAACCACATCATGGATCTCTG
CATCGAGTGCCAGGCTAACCAAGCTAGCGCTACAAGCGAGGAATGCACTG
TAGCTTGGGGGGTTTGCAACCATGCATTTCACTTTCACTGCATCAGTCGA
TGGCTGAAGACTCGTCAAGTTTGTCCATTGGATAACAGTGAGTGGGAGTT
CCAGAAGTATGGTCACTAGAGCCTTTGAGCCAGTTGAGTTTTGGATTCTG
TCTGCTATGTATTGCAGATTTCAAGTAGATATTATGGAAGACCCTGGACT
TTCTGTCAATTCTATTTGATGCTCTTTGTTATCTAAAATTCAGTTGGTTA
TGACTTGGATT
back to top