BQ623511

Overview
NameBQ623511
Unique NameBQ623511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 2.736e-98
Identity = 161/184 (87.50%), Postives = 166/184 (90.22%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:   80 AGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

HSP 2 Score: 50.447 bits (119), Expect = 2.736e-98
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            SEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   60 SEQTPSYLTGEFPGDYGWDTAGLSADP 86
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 2.736e-98
Identity = 161/184 (87.50%), Postives = 166/184 (90.22%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:   80 AGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

HSP 2 Score: 50.447 bits (119), Expect = 2.736e-98
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            SEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   60 SEQTPSYLTGEFPGDYGWDTAGLSADP 86
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 1.349e-97
Identity = 161/184 (87.50%), Postives = 166/184 (90.22%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR+                AFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:   82 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265

HSP 2 Score: 46.9802 bits (110), Expect = 1.349e-97
Identity = 19/27 (70.37%), Postives = 21/27 (77.78%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S+Q PSYLTGEFPGDYGWDT    + P
Sbjct:   62 SDQIPSYLTGEFPGDYGWDTAGLSADP 88
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 1.132e-96
Identity = 158/184 (85.87%), Postives = 164/184 (89.13%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVLMGFVEGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHI DPVANNAWAYATNFVPGK
Sbjct:   82 AGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265

HSP 2 Score: 50.447 bits (119), Expect = 1.132e-96
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            SEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   62 SEQTPSYLTGEFPGDYGWDTAGLSADP 88
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 3.279e-96
Identity = 157/184 (85.33%), Postives = 164/184 (89.13%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWA+ATNFVPGK
Sbjct:   82 AGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265

HSP 2 Score: 50.447 bits (119), Expect = 3.279e-96
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            SEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   62 SEQTPSYLTGEFPGDYGWDTAGLSADP 88
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 7.281e-96
Identity = 155/184 (84.24%), Postives = 164/184 (89.13%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILA+WA QVVLMG +EGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:   82 AGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265

HSP 2 Score: 50.447 bits (119), Expect = 7.281e-96
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            SEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   62 SEQTPSYLTGEFPGDYGWDTAGLSADP 88
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 1.240e-95
Identity = 158/184 (85.87%), Postives = 163/184 (88.59%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWAYATNFVPGK
Sbjct:   54 AGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237

HSP 2 Score: 50.447 bits (119), Expect = 1.240e-95
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            SEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   34 SEQTPSYLTGEFPGDYGWDTAGLSADP 60
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 2.109e-95
Identity = 155/184 (84.24%), Postives = 164/184 (89.13%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFAKNRELEVIHSRWAMLGALGC+FPE+LSKNGV+FGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMG +EGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWA+ATNFVPGK
Sbjct:   81 AGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264

HSP 2 Score: 50.447 bits (119), Expect = 2.109e-95
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            SEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   61 SEQTPSYLTGEFPGDYGWDTAGLSADP 87
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 3.590e-95
Identity = 155/184 (84.24%), Postives = 164/184 (89.13%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            AGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L KNGVKFGEAVWFKAG+QIF+EGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+NLYDH+ADPVANNAWA+ATNFVPG+
Sbjct:   82 AGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265

HSP 2 Score: 48.1358 bits (113), Expect = 3.590e-95
Identity = 20/27 (74.07%), Postives = 21/27 (77.78%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            SEQ PSYLTGEFPGDYGWDT    + P
Sbjct:   62 SEQIPSYLTGEFPGDYGWDTAGLSADP 88
[Close]
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 1.138e-93
Identity = 153/184 (83.15%), Postives = 162/184 (88.04%), Query Frame = 1 
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            A +SADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNG+KFGEAVWFKAGAQIFSEGGLDY GNPNLIHAQSILAIWACQVVLMG +EGYR+                AFDPLGLADDP+  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNFVPGK
Sbjct:   83 AAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266

HSP 2 Score: 46.9802 bits (110), Expect = 1.138e-93
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 SEQTPSYLTGEFPGDYGWDT 62
            SE TPSYLTGEFPGDYGWDT
Sbjct:   63 SEGTPSYLTGEFPGDYGWDT 82
The following BLAST results are available for this feature:
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB23_ORYSJ2.736e-9887.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.736e-9887.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_GOSHI1.349e-9787.50Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB24_SOLLC1.132e-9685.87Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB26_PETSP3.279e-9685.33Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC7.281e-9684.24Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB25_SOLLC1.240e-9585.87Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_LEMGI2.109e-9584.24Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA3.590e-9584.24Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_PINTH1.138e-9383.15Chlorophyll a-b binding protein type I, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00602 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00602 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623511 ID=BQ623511; Name=BQ623511; organism=Citrus sinensis; type=EST; length=675bp
GCTCTGAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTAT
GGCTGGGATACCTGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGA
ACCGTGAGCTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTT
GGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGA
AGCAGTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTG
ACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATC
TGGGCCTGCCAGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGG
TGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTT
TTGACCCACTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAG
GTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATT
CTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACG
ACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAAC
TTTGTTCCCGGAAAGTGAAGAAACTATGACTTGATGGTGGCTGGTTCATC
TGTAACATTATTCTATCATCGGATG
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