BQ623575

Overview
NameBQ623575
Unique NameBQ623575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of BQ623575 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 3 
Query:   39 SGVFKSGGYNWKLVFYPNGKKNDGGKDHLSLYLKIDDSNPHSDGTWNVNVYYKLFVYDQLSNQYLVVQDAKAPMRRFDRRKGEWGFGKFLDLATFNEPSNGYLVDESCVFGAEVYVVK 392
            S VF  GGY W+++ +P G       DHLS+YL + D+     G W+    + L V +Q++N+Y +    K    +F+ R+ +WGF  F+ L+   EP+ GYLV+++ +  AEV V K
Sbjct:   73 SDVFVVGGYKWRILIFPKGNN----VDHLSMYLDVADAANLPYG-WSRYSQFSLAVVNQVNNRYSI---RKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRK 182
[Close]
BLAST of BQ623575 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 43/127 (33.86%), Postives = 66/127 (51.97%), Query Frame = 3 
Query:   12 SESTVESFESGVFKSGGYNWKLVFYPNGKKNDGGKDHLSLYLKIDDSNPHSDGTWNVNVYYKLFVYDQLSNQYLVVQDAKAPMRRFDRRKGEWGFGKFLDLATFNEPSNGYLVDESCVFGAEVYVVK 392
            S        S VF  GGY W+++ +P G       DHLS+YL + D+     G W+    + L V +Q+  +Y V    K    +F+ R+ +WGF  F+ L+   +PS GYLV+++ +  AEV V K
Sbjct:   65 SRQNTRKHYSDVFVVGGYKWRILIFPKGNN----VDHLSMYLDVSDAASLPYG-WSRYAQFSLAVVNQIHTRYTV---RKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRK 183
The following BLAST results are available for this feature:
BLAST of BQ623575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBP13_ARATH5.556e-1435.59Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
UBP12_ARATH5.556e-1433.86Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00666 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00666 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623575 ID=BQ623575; Name=BQ623575; organism=Citrus sinensis; type=EST; length=579bp
TCAAGCTGCTATCCGAATCAACGGTTGAAAGTTTTGAATCTGGTGTTTTC
AAATCCGGGGGCTACAATTGGAAATTGGTTTTCTATCCCAATGGAAAAAA
GAATGATGGTGGCAAAGACCACCTTTCCCTTTACCTGAAAATAGACGACA
GCAATCCCCATTCTGATGGTACTTGGAATGTTAATGTGTACTACAAATTG
TTTGTGTACGATCAGCTATCGAACCAGTACTTGGTGGTTCAGGATGCTAA
AGCCCCAATGAGGCGCTTTGATAGGCGCAAGGGTGAATGGGGCTTCGGCA
AATTTCTTGACCTTGCAACTTTTAATGAACCTTCAAATGGGTACCTAGTC
GATGAAAGTTGTGTATTTGGTGCTGAGGTCTATGTTGTTAAACCAACTGG
CTCTGAGGAAATTCTTTCCTTGGTTAGTGAACCTGATGATGGAACTTATC
GTTTTACCATCCCAGCATTCGGTTCTGAGGTGATACCGTTCAGCGCTCAG
GTGAATTCACTGTTGGAGAAAGAAATTGGCAACTGGTGGTTATTCGGCAG
GATCTGAGGTGATAGAGGCAACTTATTAC
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