BQ623584

Overview
NameBQ623584
Unique NameBQ623584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3538 contig Csv1_Contig3538:749..1192. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623584 vs. ExPASy Swiss-Prot
Match: RPIA_ARATH (Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.996e-24
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 3 
Query:    3 KFTAKRLQDLFEDCGCVAKLRTTGEQ--PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVTIRNK 263
            KFTA++L+ L E  GC A LR  GE+   FVTDNGNY++D+++++D+GDL   SD ILRL GVVEHGMFLDMA+TVI+A ELGV I+NK
Sbjct:  177 KFTAEKLRSLLEGYGCEANLRL-GEKGKAFVTDNGNYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGVKIKNK 264
The following BLAST results are available for this feature:
BLAST of BQ623584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RPIA_ARATH3.996e-2462.92Probable ribose-5-phosphate isomerase OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00675 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00675 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623584 ID=BQ623584; Name=BQ623584; organism=Citrus sinensis; type=EST; length=445bp
GGAAGTTTACGGCCAAGAGGCTTCAGGATTTGTTTGAGGATTGTGGCTGT
GTTGCCAAGCTCAGAACCACCGGTGAGCAGCCGTTTGTCACCGATAATGG
CAACTACGTTATTGATTTGTATTTGAAGAAAGACATTGGCGATTTGAAAG
TTGCAAGCGACAACATTTTGCGGCTTGCCGGTGTTGTTGAGCACGGGATG
TTTCTTGATATGGCTACTACTGTGATTGTAGCGAGCGAGCTCGGCGTTAC
AATTAGGAATAAATAGTGATTTTTTTTTTAATTTTTAATTTTTAACGTGT
CGAGTCTAATTCCCAAGTGAATTTGGGCACATTGTCATTGTTATACAAAC
ACAAAAAAGGGATTTTTGGGTCCATTTTTTAAGAAACTGATGAATTCTCC
TGTATTAGGAGGTACTTCCAAGTTTTGTTTGAGACAGTTATTAGA
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