BQ623750

Overview
NameBQ623750
Unique NameBQ623750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5370 contig Csv1_Contig5370:541..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623750 vs. ExPASy Swiss-Prot
Match: GLYR1_CHICK (Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.030e-24
Identity = 58/114 (50.88%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   13 IGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPPMLQSNYALAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFRR 354
            +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ G +A+     K   +LQ N+   F LK+ QKD+RLA+ALGD      P+AAAANE ++R
Sbjct:  420 MGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDSVNHPTPMAAAANEVYKR 533          
BLAST of BQ623750 vs. ExPASy Swiss-Prot
Match: GLYR1_RAT (Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.651e-24
Identity = 58/114 (50.88%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   13 IGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPPMLQSNYALAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFRR 354
            +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ G +A+     K   +LQ N+   F LK+ QKD+RLA+ALGD      P+AAAANE ++R
Sbjct:  419 MGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKR 532          
BLAST of BQ623750 vs. ExPASy Swiss-Prot
Match: GLYR1_PONAB (Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.651e-24
Identity = 58/114 (50.88%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   13 IGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPPMLQSNYALAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFRR 354
            +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ G +A+     K   +LQ N+   F LK+ QKD+RLA+ALGD      P+AAAANE ++R
Sbjct:  420 MGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKR 533          
BLAST of BQ623750 vs. ExPASy Swiss-Prot
Match: GLYR1_MOUSE (Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.651e-24
Identity = 58/114 (50.88%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   13 IGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPPMLQSNYALAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFRR 354
            +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ G +A+     K   +LQ N+   F LK+ QKD+RLA+ALGD      P+AAAANE ++R
Sbjct:  413 MGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKR 526          
BLAST of BQ623750 vs. ExPASy Swiss-Prot
Match: GLYR1_BOVIN (Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.651e-24
Identity = 58/114 (50.88%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   13 IGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPPMLQSNYALAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFRR 354
            +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ G +A+     K   +LQ N+   F LK+ QKD+RLA+ALGD      P+AAAANE ++R
Sbjct:  420 MGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKR 533          
BLAST of BQ623750 vs. ExPASy Swiss-Prot
Match: GLYR1_HUMAN (Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 4.522e-24
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 1
Query:   13 IGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPPMLQSNYALAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFRR 354
            +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA  +G   +TLLD+L+ G +A+     K   +LQ N+   F LK+ QKD+RLA+ALGD      P+AAAANE ++R
Sbjct:  420 MGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAHVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKR 533          
BLAST of BQ623750 vs. ExPASy Swiss-Prot
Match: GLYR1_XENTR (Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.718e-23
Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   13 IGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPPMLQSNYALAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFRR 354
            +GK +FFLGEVGN A+M L++NM+ G  M T +EG+ LA+ +G   +TLLD+L+ G +A+     K   +LQ N+   F LK+ QKD+RLA+ALGD      P+AAAANE ++R
Sbjct:  401 MGKTSFFLGEVGNAARMMLILNMVQGSFMATIAEGMTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDSVNHPTPMAAAANEVYKR 514          
BLAST of BQ623750 vs. ExPASy Swiss-Prot
Match: GLYR1_DANRE (Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.361e-20
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   13 IGKKAFFL-GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPPMLQSNYALAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFRR 354
            +GK +FF+ GE GN A+M L++NM+ G  M T +EGL LA+ +G   +T LD+L  G +A+     K   +LQ N+   + LKH QKD+RLA+++GD      P+AAAANE ++R
Sbjct:  328 MGKTSFFIAGEAGNAARMMLILNMVQGSFMATIAEGLTLAQATGQSQQTFLDILCQGQMASTFVDQKCQNILQGNFKPDYYLKHIQKDLRLAISMGDSVNHPTPMAAAANEVYKR 442          
BLAST of BQ623750 vs. ExPASy Swiss-Prot
Match: GLYR1_ANOGA (Putative oxidoreductase GLYR1 homolog OS=Anopheles gambiae GN=AGAP009949 PE=3 SV=5)

HSP 1 Score: 92.4337 bits (228), Expect = 7.470e-19
Identity = 44/119 (36.97%), Postives = 75/119 (63.03%), Query Frame = 1
Query:   13 IGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPPMLQSNYALAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFRRPEVWG 369
            I + +F+LG+VGN  KM L++ MI G  +   +E + LA+++GL  + +L+VL+L  +++ M   KG  +++  +     LKH QKD++LAL+L D    S+PI AA+NE ++  +  G
Sbjct:  433 ISRNSFYLGDVGNATKMNLILQMISGITLAGVAEAMALADRAGLQQKDVLEVLELTNMSSEMMLQKGNAIIKGEFPTHHALKHMQKDLKLALSLADGLEQSLPITAASNEVYKHAKRLG 551          
BLAST of BQ623750 vs. ExPASy Swiss-Prot
Match: GLYR1_AEDAE (Putative oxidoreductase GLYR1 homolog OS=Aedes aegypti GN=AAEL006684 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.707e-18
Identity = 43/119 (36.13%), Postives = 75/119 (63.03%), Query Frame = 1
Query:   13 IGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPPMLQSNYALAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFRRPEVWG 369
            I + +F++G+VGN  KM LV+ MI G M+   +EGL LA+++GL  + +L+VL+L  +++ +   KG  +++  +     LKH QKD++LAL + +     +PI AA+NE ++  +  G
Sbjct:  426 ISRNSFYMGDVGNATKMNLVLQMISGVMLAGIAEGLALADRAGLQQKDVLEVLELTSMSSELVMQKGNAIIKGEFPPQQALKHMQKDLKLALNMAEGLEQPLPITAASNEVYKHAKRLG 544          
The following BLAST results are available for this feature:
BLAST of BQ623750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GLYR1_CHICK2.030e-2450.88Putative oxidoreductase GLYR1 OS=Gallus gallus GN=... [more]
GLYR1_RAT2.651e-2450.88Putative oxidoreductase GLYR1 OS=Rattus norvegicus... [more]
GLYR1_PONAB2.651e-2450.88Putative oxidoreductase GLYR1 OS=Pongo abelii GN=G... [more]
GLYR1_MOUSE2.651e-2450.88Putative oxidoreductase GLYR1 OS=Mus musculus GN=G... [more]
GLYR1_BOVIN2.651e-2450.88Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLY... [more]
GLYR1_HUMAN4.522e-2450.88Putative oxidoreductase GLYR1 OS=Homo sapiens GN=G... [more]
GLYR1_XENTR1.718e-2348.25Putative oxidoreductase GLYR1 OS=Xenopus tropicali... [more]
GLYR1_DANRE1.361e-2044.35Putative oxidoreductase GLYR1 OS=Danio rerio GN=gl... [more]
GLYR1_ANOGA7.470e-1936.97Putative oxidoreductase GLYR1 homolog OS=Anopheles... [more]
GLYR1_AEDAE3.707e-1836.13Putative oxidoreductase GLYR1 homolog OS=Aedes aeg... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00841 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00841 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623750 ID=BQ623750; Name=BQ623750; organism=Citrus sinensis; type=EST; length=388bp
GCTCTCAATGTAATTGGAAAGAAGGCCTTCTTTTTGGGGGAGGTCGGAAA
CGGAGCAAAAATGAAACTTGTTGTTAACATGATAATGGGCTGTATGATGA
ATACATTTTCTGAAGGACTTGTACTGGCTGAAAAGAGTGGACTTGACCCT
CGCACTTTACTTGATGTACTGGACCTGGGTGGTATTGCTAATCCTATGTT
CAAGGGGAAAGGGCCGCCTATGCTCCAGAGCAATTATGCCCTTGCCTTTC
CTCTTAAACACCAGCAGAAGGACATGAGGTTGGCTCTTGCCCTTGGGGAT
GAAAATGCTGTATCGATGCCAATAGCAGCAGCTGCTAACGAGGCTTTCAG
AAGGCCAGAAGTTTGGGGTTAGGAGATAATGACTTTTC
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