BQ623752

Overview
NameBQ623752
Unique NameBQ623752
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623752 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.333e-34
Identity = 53/67 (79.10%), Postives = 62/67 (92.54%), Query Frame = 2
Query:  110 DNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 310
            +N ITVGTQH LDPLT++KAR+NN G ASAL+QHEWRPKSLFT+SGEVDTK+++K AKFGLALALKP
Sbjct:  210 ENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276          

HSP 2 Score: 51.9878 bits (123), Expect = 1.333e-34
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 3
Query:    3 LNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSY 98
            LNLNNKGD+L ASYYH V+PL  TAVGAEV HS+
Sbjct:  173 LNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSF 206          
BLAST of BQ623752 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 1.438e-33
Identity = 57/67 (85.07%), Postives = 64/67 (95.52%), Query Frame = 2
Query:  110 DNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 310
            D+TITVGTQH LDPLT++KARVN+AGIASALIQHEW+PKS FTISGEVDTK+I+KSAK GLALALKP
Sbjct:  210 DSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276          

HSP 2 Score: 45.0542 bits (105), Expect = 1.438e-33
Identity = 23/32 (71.88%), Postives = 25/32 (78.12%), Query Frame = 3
Query:    3 LNLNNKGDSLAASYYHFVNPL--TAVGAEVIH 92
            L +N+KGD L ASYYH VNPL  TAVGAEV H
Sbjct:  173 LTVNDKGDLLNASYYHIVNPLFNTAVGAEVSH 204          
BLAST of BQ623752 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.873e-33
Identity = 56/67 (83.58%), Postives = 64/67 (95.52%), Query Frame = 2
Query:  110 DNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 310
            +NT+T+GTQH+LDPLTT+KARVN+ G ASALIQHEWRPKSLFTISGEVDT+AIEKSAK GLA+ALKP
Sbjct:  210 ENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276          

HSP 2 Score: 44.2838 bits (103), Expect = 1.873e-33
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 3
Query:    3 LNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSY 98
            L LN+KGD+++ASYYH V P+  TAVGAE+ HS+
Sbjct:  173 LALNDKGDTVSASYYHTVKPVTNTAVGAELTHSF 206          
BLAST of BQ623752 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 1.190e-32
Identity = 55/67 (82.09%), Postives = 63/67 (94.03%), Query Frame = 2
Query:  110 DNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 310
            +N ITVGTQH LDPLTT+KARVNNAG+A+ALIQHEWRPKS FT+SGEVD+KAI+KSAK G+ALALKP
Sbjct:  208 ENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274          

HSP 2 Score: 41.5874 bits (96), Expect = 1.190e-32
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 3
Query:    3 LNLNNKGDSLAASYYHFVNPLTAVGAEVIHSY 98
            L LN+KG+ L ASYY  V+P T VGAE+ H++
Sbjct:  173 LILNDKGEKLNASYYQIVSPSTVVGAEISHNF 204          
BLAST of BQ623752 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 2.175e-31
Identity = 48/67 (71.64%), Postives = 60/67 (89.55%), Query Frame = 2
Query:  110 DNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 310
            +N++T GTQH LDPLT +KAR NN+G ASAL+QHEWRPKS++TIS EVDTKAI+KS+K G+A+ALKP
Sbjct:  208 ENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274          

HSP 2 Score: 50.8322 bits (120), Expect = 2.175e-31
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 3
Query:    3 LNLNNKGDSLAASYYHFVN-PLTAVGAEVIHSY 98
            LNLNNKGDSL ASYYH VN   TAVGAE+ HS+
Sbjct:  172 LNLNNKGDSLTASYYHIVNHSATAVGAELTHSF 204          
BLAST of BQ623752 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.688e-31
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 2
Query:  110 DNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 310
            +NT T+GTQH LDPLTT+K RV N+G ASALIQHEWRPKSL TIS EVDTKAIEKSAK GL+LALKP
Sbjct:  210 ENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276          

HSP 2 Score: 43.5134 bits (101), Expect = 3.688e-31
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 3
Query:    3 LNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSY 98
            L LN KGD L+ASYYH +NPL  TAVG ++ H +
Sbjct:  173 LTLNEKGDLLSASYYHAINPLSNTAVGVDISHRF 206          
BLAST of BQ623752 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 8.764e-30
Identity = 49/67 (73.13%), Postives = 59/67 (88.06%), Query Frame = 2
Query:  110 DNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 310
            +N++T GTQH LDPLT +KAR+NN+G ASALIQHE+ PKSL TIS EVDTKAIEKS+K G+A+ALKP
Sbjct:  209 ENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275          

HSP 2 Score: 48.1358 bits (113), Expect = 8.764e-30
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 3
Query:    3 LNLNNKGDSLAASYYHFVNPL-TAVGAEVIHSY 98
            LNLNNKGDSL ASYYH V    TAVGAE+ HS+
Sbjct:  173 LNLNNKGDSLTASYYHIVEKSGTAVGAELTHSF 205          
BLAST of BQ623752 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.957e-26
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 2
Query:  110 DNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALK 307
            ++T+  G+QH LDP TT+K R NN G+ASAL+QHEWRPKS  TISG+VDTKAIEKS K GL+L LK
Sbjct:  211 ESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276          

HSP 2 Score: 40.4318 bits (93), Expect = 8.957e-26
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 3
Query:    3 LNLNNKGDSLAASYYHFV--NPLTAVGAEVIHS 95
            L+LNN GD+L ASYYH V  +  TAVGAE+ HS
Sbjct:  174 LHLNNHGDTLVASYYHLVKNHSGTAVGAELSHS 206          
The following BLAST results are available for this feature:
BLAST of BQ623752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC1_SOLTU1.333e-3479.10Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC1_ARATH1.438e-3385.07Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC2_SOLTU1.873e-3383.58Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC2_ARATH1.190e-3282.09Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ORYSJ2.175e-3171.64Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC_PEA3.688e-3180.60Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_WHEAT8.764e-3073.13Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE8.957e-2668.18Outer plastidial membrane protein porin OS=Zea may... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00843 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00843 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623752 ID=BQ623752; Name=BQ623752; organism=Citrus sinensis; type=EST; length=575bp
CATTGAATTTGAACAACAAAGGTGATTCCCTGGCTGCATCCTACTACCAC
TTTGTTAATCCCTTGACAGCTGTTGGTGCAGAAGTAATCCATAGCTATCT
CAACCACTGGACAATACCATCACTGTTGGGACCCAGCACATATTAGATCC
ACTGACCACATTGAAGGCGCGAGTGAACAATGCTGGCATTGCTAGTGCTC
TCATCCAGCATGAGTGGCGTCCAAAGTCGTTGTTCACCATTTCTGGTGAG
GTGGACACCAAGGCCATTGAGAAGAGTGCCAAATTTGGACTGGCATTGGC
TCTAAAGCCATAGTTGAGAGCTTGGTAGGTGTTGGTAGGCATAGTTTAGC
TGTCTGTTCAAAACTGATTATGTGTTTTGTTTTATCTCTTCTCGGTGGTT
TTGAATTGTAAAATAAAATTGGAGGATCATAAACCTGTGTCATAACTCTT
TGAGGGCTTTTACAATTTCCAATTAACCTTTTGACTGAGGTTAATACCTG
TTATTTTGTGATGTTTTCACTTGGAGATTTTATTTCAGTCATTTAATGGC
TGCCTTTAGCAAAAAAAAAAAAAAA
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