BQ623758

Overview
NameBQ623758
Unique NameBQ623758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length389
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5089 contig Csv1_Contig5089:201..589. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623758 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.438e-48
Identity = 95/129 (73.64%), Postives = 106/129 (82.17%), Query Frame = 2
Query:    5 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFNATASGDILPI 388
            MAS ATIAAVQP + +KGLGGSSL G KL +KP+RQSF+PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            S L Y +A+++GD+LPI
Sbjct:    1 MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSASSTGDVLPI 129          
BLAST of BQ623758 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.306e-47
Identity = 95/129 (73.64%), Postives = 105/129 (81.40%), Query Frame = 2
Query:    5 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFNATASGDILPI 388
            MAS ATIAAVQP A +KGLGGSSLAG KL +KP+RQSF+ KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y +A ++GD+LPI
Sbjct:    1 MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANSTGDVLPI 129          
BLAST of BQ623758 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.910e-47
Identity = 93/129 (72.09%), Postives = 106/129 (82.17%), Query Frame = 2
Query:    5 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFNATASGDILPI 388
            MASLAT+AAV+P A IKGLGGSSLAG KL++KP+R SF+PKS +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y +AT++G++LPI
Sbjct:    1 MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSATSTGEVLPI 129          
BLAST of BQ623758 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.203e-46
Identity = 89/128 (69.53%), Postives = 102/128 (79.69%), Query Frame = 2
Query:    5 MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFNATASGDILPI 388
            MASLAT+AAVQP T+KGL GSS+AGTKL +KP RQSF+  + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKR            S L Y +A A  D+LPI
Sbjct:    1 MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDVLPI 128          
BLAST of BQ623758 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.225e-38
Identity = 84/129 (65.12%), Postives = 98/129 (75.97%), Query Frame = 2
Query:    5 MASLATIAAVQPATIKGLGGSSLAGTKLTV-KPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFNATASGDILPI 388
            MASLA ++ V+P  IKGL GSS++G KL V +P+ +S R    +A AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            S LAY +A+AS D+LPI
Sbjct:    1 MASLAAVS-VKPVAIKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSASASPDLLPI 126          
BLAST of BQ623758 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.601e-37
Identity = 79/130 (60.77%), Postives = 96/130 (73.85%), Query Frame = 2
Query:   14 LATIAAVQPATIKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFNATASGDILPI 388
            +A++ AVQP  +KGL GSS++G KL V+P+     R + RP++    AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR            S +AY +A+AS D+LPI
Sbjct:    1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDLLPI 126          
BLAST of BQ623758 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.601e-37
Identity = 79/130 (60.77%), Postives = 96/130 (73.85%), Query Frame = 2
Query:   14 LATIAAVQPATIKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFNATASGDILPI 388
            +A++ AVQP  +KGL GSS++G KL V+P+     R + RP++    AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR            S +AY +A+AS D+LPI
Sbjct:    1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDLLPI 126          
BLAST of BQ623758 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.083e-37
Identity = 76/127 (59.84%), Postives = 94/127 (74.02%), Query Frame = 2
Query:   14 LATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKA--GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFNATASGDILPI 388
            +A++ AVQPA +KGL GSS++G KL V+P+  +    + +A   AVVAKYG+KSVYFDL+D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKR            S +AY +A+AS D+LPI
Sbjct:    1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASASPDLLPI 127          
BLAST of BQ623758 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.248e-14
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2
Query:  152 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 259
            KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ
Sbjct:    1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36          
The following BLAST results are available for this feature:
BLAST of BQ623758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSAH_BRARA3.438e-4873.64Photosystem I reaction center subunit VI, chloropl... [more]
PSAH2_ARATH1.306e-4773.64Photosystem I reaction center subunit VI-2, chloro... [more]
PSAH1_ARATH2.910e-4772.09Photosystem I reaction center subunit VI-1, chloro... [more]
PSAH_SPIOL4.203e-4669.53Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_MAIZE3.225e-3865.12Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSJ1.601e-3760.77Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSI1.601e-3760.77Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_HORVU6.083e-3759.84Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_PEA3.248e-1491.67Photosystem I reaction center subunit VI (Fragment... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00849 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00849 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623758 ID=BQ623758; Name=BQ623758; organism=Citrus sinensis; type=EST; length=389bp
GGCCATGGCATCTCTTGCAACCATAGCTGCTGTGCAACCAGCCACCATCA
AAGGCCTTGGAGGCAGCTCTCTTGCTGGAACTAAGCTCACCGTCAAGCCA
ACTCGCCAGAGTTTCAGACCCAAAAGCTTCAAGGCTGGTGCTGTTGTGGC
TAAGTATGGTGATAAGAGTGTGTACTTTGATTTGGAGGATTTGGGCAACA
CTACGGGCCAGTGGGACTTGTACGGATCAGATGCTCCTTCACCGTACAAC
TCTCTTCAGAGCAAGTTCTTTGAGACATTTGCGGCTCCATTCACCAAGAG
AGGATTATTGCTCAAGTTCTTGATATTGGGAGGAGGTTCAACCCTTGCTT
ACTTCAATGCTACAGCTAGTGGTGACATTCTCCCAATCA
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