BQ623785

Overview
NameBQ623785
Unique NameBQ623785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623785 vs. ExPASy Swiss-Prot
Match: BIM3_ARATH (Transcription factor BIM3 OS=Arabidopsis thaliana GN=BIM3 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.650e-36
Identity = 85/177 (48.02%), Postives = 111/177 (62.71%), Query Frame = 3
Query:  102 NNHLEEDE-EADLYDKHVNRXXXXXXXXXXXXXXQKANTHRSKHSETEQRRRSKINERFQMLRDLIPQN--DQKRDKASFLLEVIEYIQFLREKLQMYEGPYQGWTQEATKLTPWRSHNGPAETYMDQSQVIKNGSGHENNVINPGMLPNPQNSMESDLDTAAAYKATDFSPGSATT 623
            N+H  +D+ EAD+Y    +R              +  N+ RSKHSETEQRRRSKINERFQ L D+IPQN  DQKRDKASFLLEVIEYI FL+EK+ MYE  +Q W Q  TKL PWR+ +G      D  Q++K+ S ++    + G L +  NS+  D+D+A + K  + SP SA +
Sbjct:    2 NSHDIDDQLEADVYSNLPSRNDSSTGR-------RNRNSCRSKHSETEQRRRSKINERFQSLMDIIPQNQNDQKRDKASFLLEVIEYIHFLQEKVHMYEDSHQMWYQSPTKLIPWRNSHGSVAEENDHPQIVKSFSSNDKVAASSGFLLDTYNSVNPDIDSAVSTKIPEHSPVSAVS 171          
BLAST of BQ623785 vs. ExPASy Swiss-Prot
Match: BIM2_ARATH (Transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.641e-33
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = 3
Query:  204 KANTHRSKHSETEQRRRSKINERFQMLRDLIPQNDQKRDKASFLLEVIEYIQFLREKLQMYEGPYQGWTQEATKLTPWRSHNGPAETYMDQSQVIKNGSG--------HENNVI--NPGMLPNPQNSMESD 566
            KA+  RSKHS TEQRRRSKINERFQ+LR+LIP ++QKRD ASFLLEVI+Y+Q+L+EK+Q YEG Y GW+QE TKLTPWR+++   ++  +    I NGSG         E+N +   P ++  PQ  +ESD
Sbjct:   42 KASAIRSKHSVTEQRRRSKINERFQILRELIPNSEQKRDTASFLLEVIDYVQYLQEKVQKYEGSYPGWSQEPTKLTPWRNNHWRVQSLGNHPVAINNGSGPGIPFPGKFEDNTVTSTPAIIAEPQIPIESD 172          
BLAST of BQ623785 vs. ExPASy Swiss-Prot
Match: BIM1_ARATH (Transcription factor BIM1 OS=Arabidopsis thaliana GN=BIM1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.871e-28
Identity = 61/83 (73.49%), Postives = 66/83 (79.52%), Query Frame = 3
Query:  201 QKANTHRSKHSETEQRRRSKINERFQMLRDLIPQNDQKRDKASFLLEVIEYIQFLREKLQMYEGPYQGWTQEATKLTPWRSHN 449
            QK NT RSKHS TEQRRRSKIN+RFQMLR LIP +DQKRDKASFLLEVIEYIQFL+EK   Y   YQGW  E  KL  W+S+N
Sbjct:  272 QKLNTPRSKHSATEQRRRSKINDRFQMLRQLIPNSDQKRDKASFLLEVIEYIQFLQEKADKYVTSYQGWNHEPAKLLNWQSNN 354          
The following BLAST results are available for this feature:
BLAST of BQ623785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BIM3_ARATH7.650e-3648.02Transcription factor BIM3 OS=Arabidopsis thaliana ... [more]
BIM2_ARATH4.641e-3354.96Transcription factor BIM2 OS=Arabidopsis thaliana ... [more]
BIM1_ARATH5.871e-2873.49Transcription factor BIM1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00876 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00876 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623785 ID=BQ623785; Name=BQ623785; organism=Citrus sinensis; type=EST; length=705bp
TTCCCCTGCCCACCGTCCGCGTTTCAATTGTCAGCGTTGCAGCGCAACGA
CGTCGTTTCGAGAATCGGTGTCTGCAGTTTCACGAAATGGTAAAGTCTTC
GAACAATCACCTCGAAGAGGACGAAGAAGCCGACTTGTACGACAAACATG
TTAACAGAAACAACTCCTCTTCGTACAAAGGGGAGGGGAAGAGTAGTGAG
CAGAAGGCGAATACGCACCGGTCGAAGCATTCGGAGACGGAGCAGCGGAG
GAGGAGCAAGATTAATGAGAGATTTCAAATGTTGAGAGATCTCATACCTC
AAAATGATCAAAAAAGAGACAAGGCTTCGTTTCTTTTAGAGGTGATCGAG
TACATTCAGTTTTTACGAGAAAAGTTGCAGATGTATGAGGGACCATATCA
AGGGTGGACTCAAGAGGCAACAAAGTTGACACCATGGAGAAGCCATAACG
GGCCTGCAGAAACTTATATGGATCAATCCCAAGTTATAAAGAATGGTTCT
GGTCATGAGAATAACGTTATTAATCCTGGAATGCTCCCAAATCCACAGAA
TTCAATGGAATCTGATTTGGACACAGCTGCAGCATATAAAGCTACTGATT
TTTCCCCTGGGTCTGCTACTACAATGGTTCCCAAAATATGCATGCACAGC
AGAATATGTTTGCTCCTGTTGGGAAGGGGTGGCATGCCTACCCACCTTTG
CAGGA
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