BQ623816

Overview
NameBQ623816
Unique NameBQ623816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:201..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 1.240e-82
Identity = 152/183 (83.06%), Postives = 163/183 (89.07%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+H+E TGNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGT EIITPVELI++GDKVGSSEAALLAKLGIRPFSYGL VQSVY+ G
Sbjct:   16 KLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNG 198          

HSP 2 Score: 27.7202 bits (60), Expect = 1.240e-82
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1
Query:    1 VKASKAEKKIAYDAE 45
            VKA+KAEKKIAYD +
Sbjct:    2 VKATKAEKKIAYDTK 16          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 3.588e-82
Identity = 151/183 (82.51%), Postives = 163/183 (89.07%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+H+E +GNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGT EIITPVELI++GDKVGSSEAALLAKLGIRPFSYGL VQSVY+ G
Sbjct:   16 KLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNG 198          

HSP 2 Score: 27.7202 bits (60), Expect = 3.588e-82
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1
Query:    1 VKASKAEKKIAYDAE 45
            VKA+KAEKKIAYD +
Sbjct:    2 VKATKAEKKIAYDTK 16          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 3.589e-82
Identity = 154/183 (84.15%), Postives = 161/183 (87.98%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            KLC L+EEY QILV  +DNVGSNQLQNIR+GLRGDSVVLMGKNTMMKR++RMHAEKTGN A+LNLIPLL GNVGLIFTKGDL            GAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGT EIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGL V SVY+ G
Sbjct:   17 KLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNG 199          

HSP 2 Score: 25.7942 bits (55), Expect = 3.589e-82
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 1
Query:    4 KASKAEKKIAYDAE 45
            K +KAEKKIAYDA+
Sbjct:    4 KQTKAEKKIAYDAK 17          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 6.106e-82
Identity = 152/183 (83.06%), Postives = 163/183 (89.07%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            KLCQLL EY+QILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+HA+KTGN AFL+L+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGT EIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGL V+SVY+ G
Sbjct:   17 KLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNG 199          

HSP 2 Score: 26.5646 bits (57), Expect = 6.106e-82
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1
Query:    1 VKASKAEKKIAYDAE 45
            VKA+KAEKKI YD++
Sbjct:    3 VKATKAEKKIVYDSK 17          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 5.590e-80
Identity = 153/183 (83.61%), Postives = 160/183 (87.43%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            KLCQLL+EYTQILV  ADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+HAEKTGN AFLNLIPLL GNVGLIFTKG L            GAPA VGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGT EIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGL V SVY+ G
Sbjct:   17 KLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMKRSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNG 199          

HSP 2 Score: 24.6386 bits (52), Expect = 5.590e-80
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 1
Query:    4 KASKAEKKIAYDAE 45
            KA+KAEKKI YD +
Sbjct:    4 KATKAEKKIVYDGK 17          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 283.878 bits (725), Expect = 3.285e-77
Identity = 140/183 (76.50%), Postives = 160/183 (87.43%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            KLCQLL+EYT++L+A ADNVGSNQLQ IR+GLRGDS+VLMGKNT+++R I++HA+ TGN  FL L+PLL GNVGLIFTKGDL            GAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGT EIITPVELI+KGDKVGSSE+ALLAKLGIRPFSYGL + +VY++G
Sbjct:   17 KLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSG 199          

HSP 2 Score: 24.6386 bits (52), Expect = 3.285e-77
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 1
Query:    1 VKASKAEKKIAYD 39
            +K +KAEKK+AYD
Sbjct:    3 IKRTKAEKKVAYD 15          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 275.789 bits (704), Expect = 6.665e-75
Identity = 141/183 (77.05%), Postives = 157/183 (85.79%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            KLC LL+EYT++L+A ADNVGS QLQ+IRRGLRGDSVVLMGKNT+++R I+++AEKTGN  F  L+ LL GNVGLIFTKGDL            GAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGT EIITPVELI+KG+KVGSSE+ALLAKLGIRPFSYGL V SVYE G
Sbjct:   17 KLCSLLDEYTKVLIALADNVGSKQLQDIRRGLRGDSVVLMGKNTLIRRCIKVYAEKTGNHTFDPLMDLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSESALLAKLGIRPFSYGLQVTSVYEDG 199          

HSP 2 Score: 25.0238 bits (53), Expect = 6.665e-75
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 1
Query:    1 VKASKAEKKIAYD 39
            +K +KAEKKIAYD
Sbjct:    3 IKRTKAEKKIAYD 15          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 1.928e-74
Identity = 141/183 (77.05%), Postives = 154/183 (84.15%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            KLCQLL+EY+Q+L+A+ADNVGSNQLQ IR GLRGDS+VLMGKNTMMKR+IR+HAE TGN    N+  L   NVGLIFTKGDL            GAPAR GLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGT EIIT VELI+KG+KVGSSEAALLAKLGIRPFSYGL V+SVY+ G
Sbjct:   17 KLCQLLDEYSQVLIASADNVGSNQLQAIRIGLRGDSIVLMGKNTMMKRSIRLHAENTGNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELIKKGEKVGSSEAALLAKLGIRPFSYGLNVESVYDDG 199          

HSP 2 Score: 25.409 bits (54), Expect = 1.928e-74
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 1
Query:    1 VKASKAEKKIAYD 39
            VK +KAEKKIAYD
Sbjct:    3 VKPTKAEKKIAYD 15          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_CERCA (60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.633e-49
Identity = 98/183 (53.55%), Postives = 124/183 (67.76%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            K+ +L +EY +  +  ADNVGS Q+QNIR  LRG  VVLMGKNTMM++ IR H E   N     L+P ++GNVG +FTKGDL             APAR G +AP+ V++P  NTGL P +TSFFQ L+IPTKI+KGT EII  V +++ GDKVG+SEA LL  L I PFSYGL +  VY++G
Sbjct:   16 KVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTMMRKAIRGHLEN--NAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLAITQVYDSG 196          
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Match: RLA0_DROME (60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.462e-48
Identity = 98/183 (53.55%), Postives = 125/183 (68.31%), Query Frame = 2
Query:   44 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTGEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLGVQSVYETG 592
            K+ +L +E+ +  +  ADNVGS Q+QNIR  LRG +VVLMGKNTMM++ IR H E   N     L+P ++GNVG +FTKGDL             APAR G +AP+ V++P  NTGL P +TSFFQ L+IPTKI+KGT EII  V +++ GDKVG+SEA LL  L I PFSYGL V  VY++G
Sbjct:   16 KVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHLEN--NPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSG 196          
The following BLAST results are available for this feature:
BLAST of BQ623816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RLA02_ARATH1.240e-8283.0660S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA03_ARATH3.588e-8282.5160S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_SOYBN3.589e-8284.1560S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA01_ARATH6.106e-8283.0660S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA0_LUPLU5.590e-8083.6160S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_ORYSJ3.285e-7776.5060S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE6.665e-7577.0560S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_CHERU1.928e-7477.0560S acidic ribosomal protein P0 OS=Chenopodium rub... [more]
RLA0_CERCA7.633e-4953.5560S acidic ribosomal protein P0 OS=Ceratitis capit... [more]
RLA0_DROME6.462e-4853.5560S acidic ribosomal protein P0 OS=Drosophila mela... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00907 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00907 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623816 ID=BQ623816; Name=BQ623816; organism=Citrus sinensis; type=EST; length=603bp
GTGAAAGCATCGAAGGCCGAGAAGAAGATCGCGTACGACGCCGAAGCTAT
GCCAGTTGCTGGAAGAGTACACCCAAATATTGGTGGCGGCCGCCGACAAC
GTGGGGTCCAATCAACTCCAGAACATTCGTAGGGGTCTGCGTGGAGACTC
CGTTGTGCTCATGGGAAAGAACACTATGATGAAGAGGACTATCAGAATGC
ACGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCATCCCCCTCCTT
CAGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTGAAGGAAGTGAA
AGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGG
TTGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACCCC
TCCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACCAAGATTAACAA
GGGTACTGGTGAAATTATCACACCTGTGGAGCTTATTAGGAAGGGTGACA
AGGTGGGATCTTCTGAGGCAGCCCTGCTTGCAAAGCTTGGGATTAGACCC
TTCTCTTATGGGCTTGGTGTCCAGTCTGTCTATGAAACGGGTCCGTCTAC
GCC
back to top