BQ623826

Overview
NameBQ623826
Unique NameBQ623826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7118 contig Csv1_Contig7118:306..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.602e-44
Identity = 82/123 (66.67%), Postives = 103/123 (83.74%), Query Frame = 3
Query:    6 ARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGTG 374
            ARLD+A GGV+P+HTHPAASE+L V  G + AGFI+SS+NTVY +TL  GDIM+FPQGLLH+Q N+G   A+  V+F+ PNPGLQITD+ALFANNL S +VE+ TFLDDA VK+LK++LGG+G
Sbjct:   91 ARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSSSNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFANNLPSAIVEKVTFLDDAQVKKLKSVLGGSG 213          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.022e-43
Identity = 86/123 (69.92%), Postives = 100/123 (81.30%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGT 371
            LARLDL  GGVIP HTHP ASE+LLVV G I AGF++S  NT Y+KTLKKGDIM+FPQGLLHFQVN G   AL F SF+SP+PGLQI DFALF N+L ++L+ QTTFLD A +K+LK +LGGT
Sbjct:   87 LARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASD-NTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALFKNDLPTELIAQTTFLDAAQIKKLKGVLGGT 208          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.500e-42
Identity = 87/123 (70.73%), Postives = 101/123 (82.11%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGT 371
            LARLDLA GGVIP+HTHP ASE+L+V+ G I AGFISS AN VY+KTL +GD M+FPQGLLHFQ+NSG   AL FV+F S +PGLQI  FALFAN+L S+LVE TTFL DA VK+LK +LGGT
Sbjct:   89 LARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISS-ANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLPSELVEATTFLSDAEVKKLKGVLGGT 210          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.699e-42
Identity = 86/123 (69.92%), Postives = 100/123 (81.30%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGT 371
            LARLDLA GGVIP+HTHP ASE+L+V+ G I AGFISS AN VY+KTL +GD M+FPQGLLHFQ+NSG   AL FV+F S +PGLQI  FALFAN+L S+LVE TTFL D  VK+LK +LGGT
Sbjct:   89 LARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISS-ANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLPSELVEATTFLSDEEVKKLKGVLGGT 210          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.658e-41
Identity = 84/123 (68.29%), Postives = 99/123 (80.49%), Query Frame = 3
Query:    6 ARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGTG 374
            ARLDLA  GVIP+HTHP ASE+L V+ G ITAGF+SS AN VYV+TLK G +M+FPQGLLHFQ+N+G   A   V+FNS NPGLQI DFALFAN+L ++LV  TTFLD  TVK+LK +LGGTG
Sbjct:   87 ARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSS-ANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFANSLPTELVVGTTFLDATTVKKLKGVLGGTG 208          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.828e-41
Identity = 81/123 (65.85%), Postives = 99/123 (80.49%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGT 371
            LARLDL  GGV+P HTHP ASE+LLVV G I AGF++S  NT Y+KTLKKGDI++FPQGLLHFQVN G   A+ F SF+SP+PGLQI DFALF N+L+++L+ QTT LD   +K+LK +LGGT
Sbjct:   87 LARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASD-NTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGLQIVDFALFKNDLATELIAQTTLLDAPQIKKLKGVLGGT 208          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 8.230e-41
Identity = 84/123 (68.29%), Postives = 99/123 (80.49%), Query Frame = 3
Query:    6 ARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGTG 374
            ARLDLA  GVIP+HTHP ASE+L V+ G ITAGFISS AN+VYV+TLK G +M+FPQGLLHFQ+N+G   A   V+F+S +PGLQI DFALFAN LS++LV  TTFL  ATVK LK +LGGTG
Sbjct:   86 ARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISS-ANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPGLQILDFALFANTLSTELVSATTFLPPATVKTLKGVLGGTG 207          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.127e-40
Identity = 79/123 (64.23%), Postives = 98/123 (79.67%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGT 371
            +ARLDLA GGV+P HTHP ASE+L+V  G I AGF++S  NT Y++TL+KGDIM+FPQGLLHFQVN G   AL F SF S +PGLQI DFALF N+L ++++ QTTFLD A +K+LK +LGGT
Sbjct:   92 IARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASD-NTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALFKNDLPTEVIAQTTFLDAAQIKKLKGVLGGT 213          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.748e-35
Identity = 69/123 (56.10%), Postives = 92/123 (74.80%), Query Frame = 3
Query:    6 ARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKAILGGTG 374
            +R+D+  GGV+P+HTHPA SE+L V+ G + AGFISSS N VY K + KG + +FPQGLLHFQ N+G   A+ F +++S NPGLQI D+ALFANNL +  V + TFL +A V+RLK+  GG+G
Sbjct:   97 SRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSSDNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPGLQILDYALFANNLPTSYVVKGTFLAEAEVRRLKSKFGGSG 219          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.968e-26
Identity = 70/124 (56.45%), Postives = 81/124 (65.32%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFA-LFANNLSSQLVEQTTFLDDATVKRLKAILGGT 371
            LARLDLA GGVIP+HTHP ASEIL VV G I A FI SS N VY K L  GD+M+FPQGLL FQ  +G   A G       NPGLQI +F   F      + +  TT LD+AT+K+LK+ LGGT
Sbjct:   92 LARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFI-SSGNKVYEKALYPGDVMVFPQGLLDFQEITGKI-APGLCELRQRNPGLQILEFQHCFPTIFPPKTIAGTTCLDEATIKKLKSGLGGT 213          
The following BLAST results are available for this feature:
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GL814_ORYSJ1.602e-4466.67Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
AB19A_PRUPE3.022e-4369.92Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL33_ARATH1.500e-4270.73Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GLP1_SINAL5.699e-4269.92Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GL31_ARATH1.658e-4168.29Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
AB19B_PRUPE2.828e-4165.85Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
GLP1_BRANA8.230e-4168.29Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
ABP20_PRUPE3.127e-4064.23Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GL813_ORYSJ6.748e-3556.10Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GLP1_IPONI1.968e-2656.45Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01005 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01005 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623826 ID=BQ623826; Name=BQ623826; organism=Citrus sinensis; type=EST; length=551bp
GCTTGGCACGCCTAGATCTTGCAAAGGGTGGCGTAATCCCAATCCACACT
CATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCATAACTGC
CGGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCTTAAGA
AGGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAAGTAAAT
TCCGGTGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCCGAATCC
TGGACTCCAAATCACCGATTTCGCCTTATTTGCTAACAACTTGTCTTCCC
AATTGGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAGAGGCTC
AAGGCTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACCACATTCTTC
ATTTGTAGTTTTGAGTTCTTAATTTCATTTAGTTGCTAATGTTTTTGATT
GTTGGAATTCACGAGTTAGTATTTTCTGTTCTCACTTCCCCTATCTTTTC
TTCTGAATAAATAAAATTTCTCTCATTTAAAAAAAAAAAAAAAAAAACTC
C
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