BQ623915

Overview
NameBQ623915
Unique NameBQ623915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623915 vs. ExPASy Swiss-Prot
Match: KCAB_ORYSJ (Probable voltage-gated potassium channel subunit beta OS=Oryza sativa subsp. japonica GN=KOB1 PE=1 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 1.638e-74
Identity = 139/161 (86.34%), Postives = 147/161 (91.30%), Query Frame = 3 
Query:    6 RLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLANRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 488
            RLDLVGPIVEQPEYN+ SRHKVE+E+LPLYS YG+GLTTWSPLASGVLTGKY KG+IP DSRFALENYKNLANRSLVDD L KVN LKPIA ELGV LAQLAIAWCASNPNVSSVITGATKE+QI ENMKA+DVIPLLTP V+DKIEA V SKPKR ESYR
Sbjct:  168 RLDLVGPIVEQPEYNLFSRHKVESEFLPLYSTYGLGLTTWSPLASGVLTGKYAKGNIPADSRFALENYKNLANRSLVDDTLRKVNGLKPIASELGVSLAQLAIAWCASNPNVSSVITGATKENQIVENMKALDVIPLLTPEVVDKIEAVVQSKPKRTESYR 328
[Close]
BLAST of BQ623915 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 70/164 (42.68%), Postives = 105/164 (64.02%), Query Frame = 3 
Query:    6 RLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLANRSLVDDVLN---KVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 488
            + +L+ PI EQ EY+M  R KVE +   L+   G+G  TWSPLA G+++GKY+ G IPP SR +L+ Y+ L ++ L ++      K+  L+ IA+ LG  L QLAIAWC  N  VSSV+ GA+   Q+ EN+ AI V+P L+ S++ +I++ + +KP   + YR
Sbjct:  204 QFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSG-IPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSILGNKPYSKKDYR 366
[Close]
BLAST of BQ623915 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 70/164 (42.68%), Postives = 105/164 (64.02%), Query Frame = 3 
Query:    6 RLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLANRSLVDDVLN---KVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 488
            + +L+ PI EQ EY+M  R KVE +   L+   G+G  TWSPLA G+++GKY+ G IPP SR +L+ Y+ L ++ L ++      K+  L+ IA+ LG  L QLAIAWC  N  VSSV+ GA+   Q+ EN+ AI V+P L+ S++ +I++ + +KP   + YR
Sbjct:  204 QFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSG-IPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSILGNKPYSKKDYR 366
[Close]
BLAST of BQ623915 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.112e-30
Identity = 70/164 (42.68%), Postives = 105/164 (64.02%), Query Frame = 3 
Query:    6 RLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLANRSLVDDVLN---KVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 488
            + +L+ PI EQ EY+M  R KVE +   L+   G+G  TWSPLA G+++GKY+ G IPP SR +L+ Y+ L ++ L ++      K+  L+ IA+ LG  L QLAIAWC  N  VSSV+ GA+   Q+ EN+ AI V+P L+ S++ +I++ + +KP   + YR
Sbjct:  204 QFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSG-IPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYR 366
[Close]
BLAST of BQ623915 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.477e-30
Identity = 70/164 (42.68%), Postives = 104/164 (63.41%), Query Frame = 3 
Query:    6 RLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLANRSLVDDVLN---KVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 488
            + +L  PI EQ EY+M  R KVE +   L+   G+G  TWSPLA G+++GKY+ G IPP SR +L+ Y+ L ++ L ++      K+  L+ IA+ LG  L QLAIAWC  N  VSSV+ GA+   Q+ EN+ AI V+P L+ S++ +I++ + +KP   + YR
Sbjct:  204 QFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSG-IPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYR 366
[Close]
BLAST of BQ623915 vs. ExPASy Swiss-Prot
Match: KCAB2_XENLA (Voltage-gated potassium channel subunit beta-2 OS=Xenopus laevis GN=kcnab2 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.518e-30
Identity = 70/164 (42.68%), Postives = 104/164 (63.41%), Query Frame = 3 
Query:    6 RLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLANRSLVDDVLNKVNRLKP---IADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 488
            + +L+ PI EQ EY+M  R KVE +   L+   G+G  TWSPLA G+++GKY+ G IPP SR +L+ Y+ L ++ L ++   +  +LK    IA+ LG  L QLAIAWC  N  VSSV+ GA+   Q+ EN+ AI V+P L+ S++ +I+  + +KP   + YR
Sbjct:  204 QFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYD-GGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKEFQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLLENIGAIQVLPKLSSSIIHEIDGILGNKPYSKKDYR 366
[Close]
BLAST of BQ623915 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 66/164 (40.24%), Postives = 103/164 (62.80%), Query Frame = 3 
Query:    6 RLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLANRSLVDDVLNKVNRLK---PIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 488
            + +++ P+ EQ EY++  R KVE +   LY   G+G  TWSPLA G+++GKY  G +P  SR +L+ Y+ L  R + ++   + N+LK   PIA+ LG  L QLA+AWC  N  VSSV+ G++   Q+ EN+ AI V+P +T  V+++I+  + +KP   + YR
Sbjct:  238 QFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYGNG-VPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 400
[Close]
BLAST of BQ623915 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 66/164 (40.24%), Postives = 103/164 (62.80%), Query Frame = 3 
Query:    6 RLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLANRSLVDDVLNKVNRLK---PIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 488
            + +++ P+ EQ EY++  R KVE +   LY   G+G  TWSPLA G+++GKY  G +P  SR +L+ Y+ L  R + ++   + N+LK   PIA+ LG  L QLA+AWC  N  VSSV+ G++   Q+ EN+ AI V+P +T  V+++I+  + +KP   + YR
Sbjct:  256 QFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYGNG-VPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 418
[Close]
BLAST of BQ623915 vs. ExPASy Swiss-Prot
Match: KCAB1_MUSPU (Voltage-gated potassium channel subunit beta-1 OS=Mustela putorius GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 66/164 (40.24%), Postives = 103/164 (62.80%), Query Frame = 3 
Query:    6 RLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLANRSLVDDVLNKVNRLK---PIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 488
            + +++ P+ EQ EY++  R KVE +   LY   G+G  TWSPLA G+++GKY  G +P  SR +L+ Y+ L  R + ++   + N+LK   PIA+ LG  L QLA+AWC  N  VSSV+ G++   Q+ EN+ AI V+P +T  V+++I+  + +KP   + YR
Sbjct:  245 QFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYGNG-VPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 407
[Close]
BLAST of BQ623915 vs. ExPASy Swiss-Prot
Match: KCAB1_MOUSE (Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.206e-30
Identity = 66/164 (40.24%), Postives = 103/164 (62.80%), Query Frame = 3 
Query:    6 RLDLVGPIVEQPEYNMLSRHKVEAEYLPLYSNYGIGLTTWSPLASGVLTGKYNKGSIPPDSRFALENYKNLANRSLVDDVLNKVNRLK---PIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 488
            + +++ P+ EQ EY++  R KVE +   LY   G+G  TWSPLA G+++GKY  G +P  SR +L+ Y+ L  R + ++   + N+LK   PIA+ LG  L QLA+AWC  N  VSSV+ G++   Q+ EN+ AI V+P +T  V+++I+  + +KP   + YR
Sbjct:  238 QFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYGNG-VPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 400
The following BLAST results are available for this feature:
BLAST of BQ623915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
KCAB_ORYSJ1.638e-7486.34Probable voltage-gated potassium channel subunit b... [more]
KCAB2_RAT1.112e-3042.68Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE1.112e-3042.68Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_BOVIN1.112e-3042.68Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_HUMAN2.477e-3042.68Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_XENLA5.518e-3042.68Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_RAT7.206e-3040.24Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RABIT7.206e-3040.24Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MUSPU7.206e-3040.24Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MOUSE7.206e-3040.24Voltage-gated potassium channel subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00995 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00995 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623915 ID=BQ623915; Name=BQ623915; organism=Citrus sinensis; type=EST; length=656bp
CTGAGCGCTTGGATTTGGTGGGCCCCATTGTTGAGCAACCAGAGTATAAC
ATGTTGTCTAGGCACAAGGTTGAAGCTGAGTACCTCCCTCTATACTCCAA
TTATGGCATAGGTCTTACCACATGGAGTCCACTTGCATCTGGAGTCCTCA
CTGGAAAATATAACAAGGGATCTATACCACCTGACAGTCGGTTTGCTTTG
GAAAATTACAAGAATCTTGCTAACCGATCACTGGTCGATGATGTGCTGAA
TAAAGTTAATCGACTGAAGCCAATTGCAGATGAACTAGGCGTGCCTTTAG
CTCAACTTGCAATTGCATGGTGTGCTTCAAATCCTAATGTATCTTCAGTT
ATAACTGGTGCCACAAAGGAATCCCAGATTCAAGAGAACATGAAAGCCAT
TGATGTCATTCCACTGCTGACTCCGTCAGTGATGGACAAGATTGAGGCTG
CTGTTCTAAGCAAGCCAAAGCGTCCGGAGTCGTATCGGTAGGCGGAGATT
ATTTATTAGCTCATTTCCATCTTCTGCTGCGTGCGACATACCTAGCAGCT
TCAGTGTATTCATGTTGTTACTATGCTTGTCTGATGTTTTAGTTATTGGT
TCTTAGCTCTGTACTTCAGAGACTCTCAGATATGATATATTTTCTTGTAA
AAGAAA
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