BQ623923

Overview
NameBQ623923
Unique NameBQ623923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623923 vs. ExPASy Swiss-Prot
Match: PSAK_MEDSA (Photosystem I reaction center subunit psaK, chloroplastic OS=Medicago sativa GN=PSAK PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.417e-38
Identity = 77/96 (80.21%), Postives = 81/96 (84.38%), Query Frame = 2
Query:   50 GSDPKSQQPPAQSLVAAQPM-RRKCSGALGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 334
            G  P+ +  P Q LVAAQPM RRK  GALG RC FIGS TN+IMV +TTLMLFAGRFGLAPSANRKATAGLKLE RDSGLQTGDPAGFTLADTLAC
Sbjct:   14 GLRPQLKPSPIQGLVAAQPMTRRKGKGALGVRCDFIGSSTNVIMVASTTLMLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLAC 109          

HSP 2 Score: 30.8018 bits (68), Expect = 5.417e-38
Identity = 14/19 (73.68%), Postives = 18/19 (94.74%), Query Frame = 1
Query:   13 MATSLMT-MPQFSGLRPQI 66
            MATS+MT +PQF+GLRPQ+
Sbjct:    1 MATSMMTTLPQFTGLRPQL 19          
BLAST of BQ623923 vs. ExPASy Swiss-Prot
Match: PSAK_ARATH (Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.198e-36
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 2
Query:   62 KSQQPPAQSLVAAQPMRRKCSGALGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 334
            K    P Q L + QPMRRK +GALGA+C FIGS TNLIMVT+TTLMLFAGRFGLAPSANRKATAGL+LE RDSGLQTGDPAGFTLADTLAC
Sbjct:   19 KISAAPVQGLASVQPMRRKGNGALGAKCDFIGSSTNLIMVTSTTLMLFAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLAC 109          

HSP 2 Score: 24.2534 bits (51), Expect = 2.198e-36
Identity = 12/21 (57.14%), Postives = 17/21 (80.95%), Query Frame = 1
Query:   16 ATSLMTMPQFSGLR-PQISAA 75
            +T + T+PQF+GLR  +ISAA
Sbjct:    3 STMMTTLPQFNGLRATKISAA 23          
BLAST of BQ623923 vs. ExPASy Swiss-Prot
Match: PSAK_HORVU (Photosystem I reaction center subunit psaK, chloroplastic OS=Hordeum vulgare GN=PSAK PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.534e-29
Identity = 65/84 (77.38%), Postives = 71/84 (84.52%), Query Frame = 2
Query:   83 QSLVAAQPMRRKCSGALGARCGFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLAC 334
            +S+     +RR+ S   G RC +IGS TNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLE R+SGLQTGDPAGFTLADTLAC
Sbjct:   24 RSMATLPSLRRRRSQ--GIRCDYIGSSTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLAC 105          
BLAST of BQ623923 vs. ExPASy Swiss-Prot
Match: PSAK_CHLRE (Photosystem I reaction center subunit psaK, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.640e-12
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 2
Query:  146 GFIGSPTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKL--EVRDSGLQTGDPAGFTLADTLA 331
            GFIGS TNLIMV +TT  L A RFGLAP+  +  TAGLKL      +G+ + DPAGFT+ D LA
Sbjct:   28 GFIGSSTNLIMVASTTATLAAARFGLAPTVKKNTTAGLKLVDSKNSAGVISNDPAGFTIVDVLA 91          
The following BLAST results are available for this feature:
BLAST of BQ623923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAK_MEDSA5.417e-3880.21Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_ARATH2.198e-3681.32Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_HORVU9.534e-2977.38Photosystem I reaction center subunit psaK, chloro... [more]
PSAK_CHLRE3.640e-1257.81Photosystem I reaction center subunit psaK, chloro... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01014 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01014 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623923 ID=BQ623923; Name=BQ623923; organism=Citrus sinensis; type=EST; length=495bp
GAAAGCTGAAAAATGGCAACTTCTTTGATGACCATGCCACAGTTCAGTGG
GCTCAGACCCCAAATCTCAGCAGCCTCCAGCACAAAGCCTGGTAGCAGCC
CAGCCAATGAGGAGGAAATGCAGTGGAGCTTTGGGTGCTCGTTGTGGCTT
CATTGGTTCGCCCACAAATTTGATAATGGTGACAACAACAACCCTGATGC
TATTTGCTGGGAGATTTGGGCTGGCTCCATCAGCAAACAGGAAAGCAACG
GCAGGATTGAAGCTTGAAGTGAGGGACTCTGGCTTGCAAACTGGTGACCC
AGCTGGGTTCACTTTGGCTGACACATTGGCTTGTGGCAGTGTTGGTCACA
TCATTGGTGTTGGGGGTGGTCCTTGGCCTTAAGAACTTGGGTGCTCTGTA
AAAATTTTCGAAGCAGTTTGTTATGTTAAATCGATTGTTAATACTCGCTG
TGCCATTTCTGTTGCACCTAAAAAAAAAAAAAAAAAAAAAACTAG
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