BQ623924

Overview
NameBQ623924
Unique NameBQ623924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of BQ623924 vs. ExPASy Swiss-Prot
Match: PGAP3_DANRE (Post-GPI attachment to proteins factor 3 OS=Danio rerio GN=pgap3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.236e-13
Identity = 38/112 (33.93%), Postives = 59/112 (52.68%), Query Frame = 2 
Query:   77 GWMSFFILLYYKLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHG 412
            G     +LL Y+  +      Y+  T     + ++++N+WFWS VFH+RD  LTEK+D   A A++ ++  L  +R   +R  A   MV   LI   T+H+ YL F   D+G
Sbjct:  111 GLACLLMLLRYRSAVPCQSPMYHTITA----FSLVSLNAWFWSTVFHTRDTYLTEKMDYFCASAVILYSIYLCCVRTLGLRRPAISSMVGVLLILAFTSHVSYLTFVSFDYG 218
The following BLAST results are available for this feature:
BLAST of BQ623924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGAP3_DANRE5.236e-1333.93Post-GPI attachment to proteins factor 3 OS=Danio ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623924 ID=BQ623924; Name=BQ623924; organism=Citrus sinensis; type=EST; length=480bp
TTCCGCCGTGTTTACGGAATTCAGGAACCCGTTGCTGTTGCTCTCTCTGC
ACTCAATCTTTCCATACAATTTCATGGGGTGGATGTCCTTCTTCATCCTT
CTGTACTATAAGTTGCCTTTGAGACCAGATAAGAAAACTTATTACGAATA
TACTGGTTTATGGCACATCTATGGCATCCTAGCAATGAACTCCTGGTTCT
GGAGTGCTGTTTTCCACAGTCGAGATGTTGAATTGACAGAGAAGCTCGAT
TGTTCTTCTGCTGTAGCATTACTTGGTTTTAATTTCATTCTAGCAATTCT
GCGAGCTTTCAGCGTCAGAGACGAGGCTGCTAGGGTCATGGTTGCTGCTC
CATTGATTGCATTTGTGACAACTCACATCTTGTACCTGAATTTCTATAAA
CTTGATCATGGGAATTCATTTCTTTTAATGAGTTTGACTTGCAATGCATG
AGAACACATCTCAATTTAGAATTGATCATG
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