BQ623935

Overview
NameBQ623935
Unique NameBQ623935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length364
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623935 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3 
Query:    3 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 125
            FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  225 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of BQ623935 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3 
Query:    3 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 125
            FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  227 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of BQ623935 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3 
Query:    3 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 125
            FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  227 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of BQ623935 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3 
Query:    3 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 125
            FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  225 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of BQ623935 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3 
Query:    3 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 125
            FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  221 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
[Close]
BLAST of BQ623935 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3 
Query:    3 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 125
            FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  166 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
[Close]
BLAST of BQ623935 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3 
Query:    3 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 125
            FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  225 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of BQ623935 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 3 
Query:    3 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 125
            FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  215 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255
[Close]
BLAST of BQ623935 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.846e-18
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 3 
Query:    3 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 125
            FGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  234 FGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of BQ623935 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.846e-18
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 3 
Query:    3 FGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 125
            FGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  238 FGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
The following BLAST results are available for this feature:
BLAST of BQ623935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CB29_MAIZE2.841e-18100.00Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB24_TOBAC2.841e-18100.00Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL2.841e-18100.00Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC2.841e-18100.00Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ2.841e-18100.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_CUCSA2.841e-18100.00Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_ORYSJ2.841e-18100.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA2.841e-18100.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY4.846e-1897.56Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PYRPY4.846e-1897.56Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01026 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01026 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623935 ID=BQ623935; Name=BQ623935; organism=Citrus sinensis; type=EST; length=364bp
TGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAG
AACTTGGCCGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTA
CGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTA
GCGTGGAAATTGGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTC
AACTTGCAAAACATGTGAATTATGTAATGTACTGCTACTACCAGTTTGAG
GGGATTGTATTTTCATTCAATCTCTTGTCGCACGGTTCTAGTTCTAGTTC
CTCCTCCTTACAGGTTGTGCCAGAATCTAGTTACAAGTTTACATCAACAA
AATCTCCAATATGT
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