BQ623982

Overview
NameBQ623982
Unique NameBQ623982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623982 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.003e-22
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 3
Query:    3 DVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 170
            DVVSTDFVGDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRVVDLIVHMA  Q
Sbjct:  282 DVVSTDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIVHMASVQ 337          
BLAST of BQ623982 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.710e-22
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 3
Query:    3 DVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 164
            DVVSTDFVGD+RSSIFDAKAGIALS KFVKLVSWYDNEWGYS+RVVDLIVHM+K
Sbjct:  284 DVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337          
BLAST of BQ623982 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 2.918e-22
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 3
Query:    3 DVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 164
            DVVSTDFVGD+RSSIFDAKAGIALS  FVKLVSWYDNEWGYSTRVVDLI+HM+K
Sbjct:  284 DVVSTDFVGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSTRVVDLIIHMSK 337          
BLAST of BQ623982 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.977e-22
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 3
Query:    3 DVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 170
            D+VSTDFVGDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI HMAKTQ
Sbjct:  282 DLVSTDFVGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMAKTQ 337          
BLAST of BQ623982 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.977e-22
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 3
Query:    3 DVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 161
            DVVSTDFVGDSRSSIFDAKAGIALSK FVKLVSWYDNEWGYS+RV+DLI HMA
Sbjct:  271 DVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLICHMA 323          
BLAST of BQ623982 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.977e-22
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 3
Query:    3 DVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 167
            DVVSTDF+GD+RSSIFDAKAGIALS  FVKLVSWYDNEWGYS+RV+DLIVHMA T
Sbjct:  285 DVVSTDFIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDLIVHMAST 339          
BLAST of BQ623982 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.489e-22
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 3
Query:    6 VVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 170
            VVSTDF+GDSRSSIFDA+AGIALS  FVKLVSWYDNEWGYS+RVVDLIVHMA TQ
Sbjct:  286 VVSTDFIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDLIVHMAATQ 340          
BLAST of BQ623982 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.109e-21
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 3
Query:    3 DVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 170
            DVVSTDF+GD+RSSIFDAKAGIAL+   VKLVSWYDNEWGYS+RVVDLIVHM+KTQ
Sbjct:  283 DVVSTDFIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVDLIVHMSKTQ 338          
BLAST of BQ623982 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.109e-21
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 3
Query:    3 DVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 170
            D+VSTDFVGDSRSSIFDAKAGIAL+  FVKLV+WYDNEWGYS RV+DLI HMAKTQ
Sbjct:  282 DLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337          
BLAST of BQ623982 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.109e-21
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 3
Query:    3 DVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 170
            D+VSTDFVGDSRSSIFDAKAGIAL+  FVKLV+WYDNEWGYS RV+DLI HMAKTQ
Sbjct:  282 DLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337          
The following BLAST results are available for this feature:
BLAST of BQ623982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
G3PC_ANTMA1.003e-2291.07Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH1.710e-2292.59Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL2.918e-2290.74Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU4.977e-2289.29Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC4.977e-2292.45Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI4.977e-2287.27Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY8.489e-2289.09Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_RANAC1.109e-2185.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ1.109e-2185.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI1.109e-2185.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01073 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01073 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623982 ID=BQ623982; Name=BQ623982; organism=Citrus sinensis; type=EST; length=493bp
ATGATGTGGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATCTTT
GATGCCAAGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTC
ATGGTATGACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGATTG
TCCACATGGCGAAGACCCAGTAACTTACTCGGCGTGGCTTGAGTATGTAA
CACGCTTAGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTT
TGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAGACA
TTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGATTTTCCCTT
GTAGTATGCAAGAAGAGTTGGTGAACCAACTTATGTTTTGTTAGCGAGAA
AACAATTGTCTATTGGAAACTTGCTTTTATAATTTTTCATCTAGTTAGTA
TCGAAGACCTGTTCTTCAGCTGTTAAAAAAAAAAAAAAAAAAA
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