C21841

Overview
NameC21841
Unique NameC21841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.121e-29
Identity = 62/73 (84.93%), Postives = 63/73 (86.30%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            ISHMDT  VVRGF GQQQL DAL GMD+VIIPAGVPRKPGMTRDDL NINAGIV TLCE IAKCCPK IVN I
Sbjct:   85 ISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNVI 157          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.375e-28
Identity = 59/73 (80.82%), Postives = 63/73 (86.30%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            ISHMDT  VVRGF GQQQL  ALTGMD++I+PAGVPRKPGMTRDDL  INAGIV TLCEGIAKCCP+ IVN I
Sbjct:   88 ISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLI 160          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 2.345e-28
Identity = 60/73 (82.19%), Postives = 63/73 (86.30%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            ISHM+T  VVRGF GQ QL +ALTGMD+VIIPAGVPRKPGMTRDDL NINAGIV TLCEGIAKCCP  IVN I
Sbjct:   88 ISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVI 160          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.345e-28
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            ISHMDT  VVRGF GQQQL  ALTGMD+V+IPAGVPRKPGMTRDDL  INAGIV TLCEGIAKCCP  IVN I
Sbjct:   88 ISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLI 160          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.000e-28
Identity = 58/73 (79.45%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SHMDT  VVRGF G +QL DALTGMD+VIIPAGVPRKPGMTRDDL  INAGIV TLCEG+AKCCP  IVN I
Sbjct:   90 VSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLI 162          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 4.000e-28
Identity = 58/73 (79.45%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SHMDT  VVRGF G +QL DALTGMD+VIIPAGVPRKPGMTRDDL  INAGIV TLCEG+AKCCP  IVN I
Sbjct:   90 VSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLI 162          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.225e-28
Identity = 57/73 (78.08%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SHMDT  VVRGF G +QL DALTGMD+VIIPAG+PRKPGMTRDDL  INAGIV TLCEG+AKCCP  IVN I
Sbjct:   86 VSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLI 158          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.824e-28
Identity = 60/73 (82.19%), Postives = 63/73 (86.30%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            ISHMDT+ VVRGF GQ QL +ALTGMD+VIIPAGVPRKPGMTRDDL NINAGIV TL E IAKCCPK IVN I
Sbjct:   86 ISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNII 158          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHM_EUCGU (Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.079e-21
Identity = 46/73 (63.01%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            + H++T   V G+ G++QL  AL G D+VIIPAGVPRKPGMTRDDL NINAGIV +LC  IAK CP  +VN I
Sbjct:   78 VGHINTRSEVAGYVGEEQLGQALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAVVNMI 150          
BLAST of C21841 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.378e-20
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   10 ISHMDTNVVVRGFXGQQQLXDALTGMDIVIIPAGVPRKPGMTRDDLXNINAGIVXTLCEGIAKCCPKXIVNSI 228
            +SH++T   V+G+ G++QL +AL G D+VIIPAGVPRKPGMTRDDL NINAGIV +L   IAK CP  I+N I
Sbjct:   70 VSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAGIVRSLTAAIAKYCPHAIINMI 142          
The following BLAST results are available for this feature:
BLAST of C21841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
MDHG_SOYBN2.121e-2984.93Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHG_CITLA1.375e-2880.82Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHG_ORYSJ2.345e-2882.19Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHG_CUCSA2.345e-2882.19Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG2_BRANA4.000e-2879.45Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA4.000e-2879.45Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHG1_ARATH5.225e-2878.08Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG2_ARATH6.824e-2882.19Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]
MDHM_EUCGU8.079e-2163.01Malate dehydrogenase, mitochondrial OS=Eucalyptus ... [more]
MDHM_FRAAN1.378e-2063.01Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]

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Properties
Property NameValue
Genbank descriptionC21841 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSP-38R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21841 ID=C21841; Name=C21841; organism=Citrus sinensis; type=EST; length=229bp
GGCANGAGTATCAGTCACATGGATACAAATGTTGTGGTACGAGGATTTNT
GGGGCAACAGCAATTGGNGGATGCCCTCACGGGCATGGACATTGTAATCA
TTCCCGCTGGTGTTCCTAGGAAACCTGGAATGACTAGGGATGATCTGNTC
AATATCAATGCCGGAATTGTTANGACCCTTTGTGAAGGAATAGCTAAGTG
CTGTCCAAAAGNTATTGTGAACTCGATTA
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