C21866

Overview
NameC21866
Unique NameC21866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length254
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4376 contig Csv1_Contig4376:504..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.405e-32
Identity = 67/79 (84.81%), Postives = 69/79 (87.34%), Query Frame = 2
Query:   11 YMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            YMKRFIKLLTPKL EE+QE FKKNIEGATKFLLSKLSDLQFF GESMHDDG  VF YY+ GATDPTF Y A ALKEVKC
Sbjct:   90 YMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.764e-31
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 2
Query:   11 YMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            +MKR+IK LTPKL  E+QE+FKK+IEGATKFLLSKLSDLQFF GESMHDDGC VF YYK+GATDPTF Y A  LKE+KC
Sbjct:   90 FMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.421e-31
Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 2
Query:    8 AYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            AY+K+FIKLLTPKL  E+QE FKKNIEGATKFLL KL D +FF GESMHDD C VF YY+EGATDPTF Y+A ALKEVKC
Sbjct:   89 AYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.849e-29
Identity = 58/79 (73.42%), Postives = 67/79 (84.81%), Query Frame = 2
Query:   11 YMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            ++KR+IKLLTPKL  E+QE+FKK+IEGATK+LL KL DLQFF GESMHDDG  VF YYK+GA DPTF Y A ALKE+KC
Sbjct:   89 FVKRYIKLLTPKLDAEKQELFKKHIEGATKYLLCKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYALKEIKC 167          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.983e-28
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 2
Query:   11 YMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            ++KR+IK L  KLSEERQ  FKKN+EGA K L+SKLSDLQFF GESMHDDG  VF YYK+GATDPTF Y AD LKEVKC
Sbjct:   89 FIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC 167          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 2.983e-28
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = 2
Query:   11 YMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            ++K++IKLLTPKL  E+QE FKKNIEGATK+LL KL DLQFF GESMHDDG  VF YYK+GA DPTF Y + ALKE+KC
Sbjct:   89 FVKKYIKLLTPKLEAEKQEHFKKNIEGATKYLLGKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFSFALKEIKC 167          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.896e-28
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 2
Query:    8 AYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            AY+K++IKLLTPKLSEE Q +FKK IEGATKFLL +LSD QFF GE MHDD   VF YYKEG+T+PTF Y A  LKEVKC
Sbjct:   89 AYIKKYIKLLTPKLSEEDQAVFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.088e-28
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 2
Query:   11 YMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            +MKRFIK LTPKL  E+QE+FKK+IEGATK+LLSK+ D QFF GESM DD C VF YYK+GA DPTF Y A ALKEVKC
Sbjct:   90 FMKRFIKNLTPKLDAEQQELFKKHIEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_TOBAC (Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.678e-28
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 2
Query:    8 AYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            AYMK++IK LTPKL  E++E+FK NI+GATK+LLSKLSDLQFF GESM DD   VF YYK+GATDPTF Y+A  LKEVKC
Sbjct:   89 AYMKKYIKNLTPKLGAEQEEVFKNNIQGATKYLLSKLSDLQFFVGESMADDTGMVFAYYKDGATDPTFLYLAHGLKEVKC 168          
BLAST of C21866 vs. ExPASy Swiss-Prot
Match: TCTP_BRAOL (Translationally-controlled tumor protein homolog OS=Brassica oleracea GN=TCTP PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.133e-27
Identity = 58/80 (72.50%), Postives = 64/80 (80.00%), Query Frame = 2
Query:    8 AYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFXGESMHDDGCXVFXYYKEGATDPTFXYIADALKEVKC 247
            AY+K++IKLLTPKL+ E+QE FKK IEGATKFLL KL D QFF GE MHDD   VF YYKEGAT+PTF Y A  LKEVKC
Sbjct:   89 AYIKKYIKLLTPKLTPEQQEEFKKGIEGATKFLLPKLKDFQFFVGEGMHDDSTIVFAYYKEGATNPTFLYFAHGLKEVKC 168          
The following BLAST results are available for this feature:
BLAST of C21866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TCTP_HEVBR3.405e-3284.81Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV3.764e-3178.48Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA6.421e-3177.50Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA7.849e-2973.42Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ2.983e-2874.68Translationally-controlled tumor protein homolog O... [more]
TCTP_PEA2.983e-2872.15Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH3.896e-2872.50Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN5.088e-2873.42Translationally-controlled tumor protein homolog O... [more]
TCTP_TOBAC8.678e-2872.50Translationally-controlled tumor protein homolog O... [more]
TCTP_BRAOL1.133e-2772.50Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionC21866 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSN-12R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21866 ID=C21866; Name=C21866; organism=Citrus sinensis; type=EST; length=254bp
GGCACGAGCATACATGAAGAGATTCATCAAGTTGCTGACGCCCAAGCTGA
GTGAGGAGAGGCAGGAGATATTTAAGAAGAATATTGAGGGAGCGACCAAG
TTCTTGCTCTCGAAGCTCAGTGACCTTCAATTCTTTNTTGGGGAGAGCAT
GCATGATGATGGCTGTNTTGTCTTTNCTTACTACAAGGAAGGTGCGACCG
ACCCAACATTTTTNTATATTGCTGATGCATTGAAGGAGGTGAAGTGCTAA
GCCG
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