C21881

Overview
NameC21881
Unique NameC21881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2168 contig Csv1_Contig2168:279..537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21881 vs. ExPASy Swiss-Prot
Match: FKB22_ARATH (FK506-binding protein 2-2 OS=Arabidopsis thaliana GN=FKBP15-2 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.097e-25
Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = 2
Query:    8 ELGSGHVIKGWXQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFXTELXTVNGNPASGEK 208
            +LGSG VIKGW QGLLG CVGEKRKLKIPAKLGYG QGSPPTIPGGATLIF TEL  VN  PA GE+
Sbjct:   82 KLGSGQVIKGWDQGLLGACVGEKRKLKIPAKLGYGEQGSPPTIPGGATLIFDTELIAVNEKPAGGEE 148          
BLAST of C21881 vs. ExPASy Swiss-Prot
Match: FKB15_VICFA (FK506-binding protein 2 OS=Vicia faba GN=FKBP15 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.070e-24
Identity = 54/67 (80.60%), Postives = 55/67 (82.09%), Query Frame = 2
Query:    8 ELGSGHVIKGWXQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFXTELXTVNGNPASGEK 208
            ELG G VIKGW QGLLGMC+GEKRKLKIPAKLGYG QGSPPTIPGGATLIF TEL  VN    S EK
Sbjct:   79 ELGGGQVIKGWDQGLLGMCLGEKRKLKIPAKLGYGEQGSPPTIPGGATLIFDTELVGVNDKSLSEEK 145          
BLAST of C21881 vs. ExPASy Swiss-Prot
Match: FKB21_ARATH (FK506-binding protein 2-1 OS=Arabidopsis thaliana GN=FKBP15-1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.342e-23
Identity = 52/69 (75.36%), Postives = 55/69 (79.71%), Query Frame = 2
Query:    8 ELGSGHVIKGWXQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFXTELXTVNGNPASGEKLK 214
            ELG+G VI GW QGLLG CVGEKRKLKIP+KLGYG  GSPP IPGGATLIF TEL  VNG P+S  K K
Sbjct:   82 ELGTGQVIPGWDQGLLGACVGEKRKLKIPSKLGYGDNGSPPKIPGGATLIFDTELVAVNGEPSSEAKSK 150          
BLAST of C21881 vs. ExPASy Swiss-Prot
Match: FKBP2_MOUSE (FK506-binding protein 2 OS=Mus musculus GN=Fkbp2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.938e-18
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 2
Query:   11 LGSGHVIKGWXQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFXTELXTV 181
            LG+G VIKGW QGLLGMC GEKRKL IP++LGYG +G+PP IPGGATL+F  EL  +
Sbjct:   78 LGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKI 134          
BLAST of C21881 vs. ExPASy Swiss-Prot
Match: FKBP2_HUMAN (FK506-binding protein 2 OS=Homo sapiens GN=FKBP2 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.938e-18
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 2
Query:   11 LGSGHVIKGWXQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFXTELXTV 181
            LG+G VIKGW QGLLGMC GEKRKL IP++LGYG +G+PP IPGGATL+F  EL  +
Sbjct:   80 LGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKI 136          
BLAST of C21881 vs. ExPASy Swiss-Prot
Match: FKBP2_BOVIN (FK506-binding protein 2 OS=Bos taurus GN=FKBP2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.938e-18
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 2
Query:   11 LGSGHVIKGWXQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFXTELXTV 181
            LG+G VIKGW QGLLGMC GEKRKL IP++LGYG +G+PP IPGGATL+F  EL  +
Sbjct:   78 LGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKI 134          
BLAST of C21881 vs. ExPASy Swiss-Prot
Match: FKB2B_RHIOR (FK506-binding protein 2B OS=Rhizopus oryzae GN=FKBP3 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.756e-15
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 2
Query:   11 LGSGHVIKGWXQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFXTELXTV 181
            LG+G VI+GW QGLLGMCVGEKR+L IP  LGYG +G+   IPGGATL+F  EL  +
Sbjct:   79 LGAGQVIQGWDQGLLGMCVGEKRRLVIPPHLGYGERGAGGVIPGGATLVFEVELLEI 135          
BLAST of C21881 vs. ExPASy Swiss-Prot
Match: FKBP2_EMENI (FK506-binding protein 2 OS=Emericella nidulans GN=fkbB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.294e-15
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 2
Query:    8 ELGSGHVIKGWXQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFXTELXTVNGNP 193
            +LG+G VIKGW +GLL MCVGEKR L IP + GYG +G  P IPGGATLIF TEL  + G P
Sbjct:   71 KLGAGRVIKGWDEGLLDMCVGEKRTLTIPPEYGYGDRGIGP-IPGGATLIFQTELLEIEGVP 131          
BLAST of C21881 vs. ExPASy Swiss-Prot
Match: FKBP2_ASPFU (FK506-binding protein 2 OS=Aspergillus fumigatus GN=fpr2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.110e-15
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    8 ELGSGHVIKGWXQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFXTELXTVNG 187
            +LG+G VIKGW +GLL MCVGEKR L IP + GYG +G  P IPGGATLIF TEL  + G
Sbjct:   70 KLGAGRVIKGWDEGLLDMCVGEKRTLTIPPEYGYGERGIGP-IPGGATLIFETELVQIEG 128          
BLAST of C21881 vs. ExPASy Swiss-Prot
Match: FKBP2_ASPOR (FK506-binding protein 2 OS=Aspergillus oryzae GN=fpr2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.673e-15
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    8 ELGSGHVIKGWXQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFXTELXTVNG 187
            ++GSG VIKGW +GLL MC+GEKR L IP + GYG++G  P IPGGATLIF TEL  ++G
Sbjct:   70 KVGSGMVIKGWDEGLLDMCIGEKRTLTIPPEYGYGSRGVGP-IPGGATLIFETELVGIDG 128          
The following BLAST results are available for this feature:
BLAST of C21881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
FKB22_ARATH1.097e-2582.09FK506-binding protein 2-2 OS=Arabidopsis thaliana ... [more]
FKB15_VICFA2.070e-2480.60FK506-binding protein 2 OS=Vicia faba GN=FKBP15 PE... [more]
FKB21_ARATH1.342e-2375.36FK506-binding protein 2-1 OS=Arabidopsis thaliana ... [more]
FKBP2_MOUSE4.938e-1870.18FK506-binding protein 2 OS=Mus musculus GN=Fkbp2 P... [more]
FKBP2_HUMAN4.938e-1870.18FK506-binding protein 2 OS=Homo sapiens GN=FKBP2 P... [more]
FKBP2_BOVIN4.938e-1870.18FK506-binding protein 2 OS=Bos taurus GN=FKBP2 PE=... [more]
FKB2B_RHIOR1.756e-1564.91FK506-binding protein 2B OS=Rhizopus oryzae GN=FKB... [more]
FKBP2_EMENI2.294e-1564.52FK506-binding protein 2 OS=Emericella nidulans GN=... [more]
FKBP2_ASPFU5.110e-1565.00FK506-binding protein 2 OS=Aspergillus fumigatus G... [more]
FKBP2_ASPOR6.673e-1563.33FK506-binding protein 2 OS=Aspergillus oryzae GN=f... [more]

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Properties
Property NameValue
Genbank descriptionC21881 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSJ-38R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21881 ID=C21881; Name=C21881; organism=Citrus sinensis; type=EST; length=258bp
GGCACGAGAGCTTGGCAGCGGTCATGTAATCAAAGGATGGGNCCAAGGAC
TTTTGGGAATGTGCGTCGGTGAGAAGCGAAAGTTGAAAATTCCTGCAAAG
CTTGGTTATGGGGCCCAGGGTTCTCCCCCTACCATCCCAGGTGGAGCAAC
ATTGATCTTTNACACCGAGCTTNTAACAGTAAATGGGAACCCAGCAAGCG
GGGAGAAACTGAAGATGNGCTATGATTACCTCTCGATTGNGCAGATTTCC
TANGGCAT
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