CB250275

Overview
NameCB250275
Unique NameCB250275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length376
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250275 vs. ExPASy Swiss-Prot
Match: ILL6_ORYSJ (IAA-amino acid hydrolase ILR1-like 6 OS=Oryza sativa subsp. japonica GN=ILL6 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.630e-29
Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 1
Query:    1 NYRVVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFL 204
            +YR VPPMMGAEDFSFYS+VVPA FYYIG++NETLGS+HTGHSPYFMIDEDVLP GAA HA IAER+L
Sbjct:  420 SYRDVPPMMGAEDFSFYSQVVPAGFYYIGVRNETLGSVHTGHSPYFMIDEDVLPTGAAFHAAIAERYL 487          
BLAST of CB250275 vs. ExPASy Swiss-Prot
Match: ILL6_ARATH (IAA-amino acid hydrolase ILR1-like 6 OS=Arabidopsis thaliana GN=ILL6 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.864e-25
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    1 NYRVVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNE 210
            ++ + P MMGAEDF+FYSE++PAAFY+IGI+NE LGS+H  HSP+FMIDED LPVGAAVHA +AER+LN+
Sbjct:  392 HFTLAPQMMGAEDFAFYSEIIPAAFYFIGIRNEELGSVHIAHSPHFMIDEDSLPVGAAVHAAVAERYLND 461          
BLAST of CB250275 vs. ExPASy Swiss-Prot
Match: ILR1_ARATH (IAA-amino acid hydrolase ILR1 OS=Arabidopsis thaliana GN=ILR1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.698e-16
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 NYRVVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNEYG 216
            N+   P  MG EDFSF+++   AA + +G+KNETLG+    HSPYF +DE+ LPVGAA+HA +A  +L+E+G
Sbjct:  360 NFHDFPVTMGGEDFSFFTQKTKAAIFVLGVKNETLGAGKPLHSPYFFVDEEALPVGAALHAAMAVSYLDEHG 431          
BLAST of CB250275 vs. ExPASy Swiss-Prot
Match: ILL7_ORYSJ (IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sativa subsp. japonica GN=ILL7 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.603e-16
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    7 RVVPPMMGAEDFSFYSEVVPAAFYYIGIKNET-LGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNEY 213
            +V  P MG+EDF+FY++  PAAF+ IG+ NET +  ++  HSP+F++DEDVLPVGAA+HA +A  +LN++
Sbjct:  380 KVGTPFMGSEDFAFYAQRFPAAFFMIGVGNETTMRKVYPLHSPHFVVDEDVLPVGAALHAAVAMEYLNKH 449          
BLAST of CB250275 vs. ExPASy Swiss-Prot
Match: ILL9_ORYSJ (IAA-amino acid hydrolase ILR1-like 9 OS=Oryza sativa subsp. japonica GN=ILL9 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.284e-15
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    7 RVVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGS---IHTGHSPYFMIDEDVLPVGAAVHATIAERFLNEY 213
            RV P +MGAEDF FY+  +P+AF+ IG+ N T  S    HT HSP+F+IDE  LPVGAAVHA +A  +L+++
Sbjct:  365 RVAPQLMGAEDFGFYAARMPSAFFTIGVGNATTSSARAAHTTHSPHFVIDEAALPVGAAVHAAVAIDYLSKH 436          
BLAST of CB250275 vs. ExPASy Swiss-Prot
Match: ILL2_ORYSJ (IAA-amino acid hydrolase ILR1-like 2 OS=Oryza sativa subsp. japonica GN=ILL2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.284e-15
Identity = 34/65 (52.31%), Postives = 51/65 (78.46%), Query Frame = 1
Query:   19 PMMGAEDFSFYSEVVPAA-FYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNE 210
            P MG+EDF+ +SE VPA+ FY++G++NE  G +H  HSP+F +D+  LP GAA+HA++A R+L+E
Sbjct:  379 PCMGSEDFAVFSEAVPASHFYFVGVRNEAEGLVHLAHSPHFRVDDAALPYGAALHASLAMRYLDE 443          
BLAST of CB250275 vs. ExPASy Swiss-Prot
Match: ILL1_ORYSJ (IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. japonica GN=ILL1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.983e-15
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 NYRVVPPMMGAEDFSFYSEVVPAAFYY-IGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNEY 213
            N R   P+MGAEDF+FY++ +PA +YY +G+ NET G     HSPYF I+ED LP GAA+ A++A R+L E+
Sbjct:  357 NVRDKQPLMGAEDFAFYADAIPATYYYFLGMYNETRGPQAPHHSPYFTINEDALPYGAALQASLAARYLLEH 428          
BLAST of CB250275 vs. ExPASy Swiss-Prot
Match: ILL1_ORYSI (IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. indica GN=ILL1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.983e-15
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 NYRVVPPMMGAEDFSFYSEVVPAAFYY-IGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNEY 213
            N R   P+MGAEDF+FY++ +PA +YY +G+ NET G     HSPYF I+ED LP GAA+ A++A R+L E+
Sbjct:  357 NVRDKQPLMGAEDFAFYADAIPATYYYFLGMYNETRGPQAPHHSPYFTINEDALPYGAALQASLATRYLLEH 428          
BLAST of CB250275 vs. ExPASy Swiss-Prot
Match: ILL5_ORYSJ (IAA-amino acid hydrolase ILR1-like 5 OS=Oryza sativa subsp. japonica GN=ILL5 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.089e-15
Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   22 MMGAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNE 210
            +M  EDF+FY ++VP   + IGI+N  +GS+HT H+P F +DEDV+P+GAA+H  +AE +L E
Sbjct:  351 IMAGEDFAFYQQLVPGVMFGIGIRNGEVGSVHTVHNPKFFVDEDVIPIGAALHTALAEMYLTE 413          
BLAST of CB250275 vs. ExPASy Swiss-Prot
Match: ILL4_ARATH (IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.298e-14
Identity = 31/70 (44.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 NYRVVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVLPVGAAVHATIAERFLNE 210
            NY  + P+MG+EDFSFY + +P  F ++G++N+    + + HSPYF ++E++LP GA++HA++A R+L E
Sbjct:  356 NYVEMQPLMGSEDFSFYQQAIPGHFSFVGMQNKARSPMASPHSPYFEVNEELLPYGASLHASMATRYLLE 425          
The following BLAST results are available for this feature:
BLAST of CB250275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ILL6_ORYSJ3.630e-2983.82IAA-amino acid hydrolase ILR1-like 6 OS=Oryza sati... [more]
ILL6_ARATH1.864e-2570.00IAA-amino acid hydrolase ILR1-like 6 OS=Arabidopsi... [more]
ILR1_ARATH2.698e-1651.39IAA-amino acid hydrolase ILR1 OS=Arabidopsis thali... [more]
ILL7_ORYSJ4.603e-1652.86IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sati... [more]
ILL9_ORYSJ2.284e-1554.17IAA-amino acid hydrolase ILR1-like 9 OS=Oryza sati... [more]
ILL2_ORYSJ2.284e-1552.31IAA-amino acid hydrolase ILR1-like 2 OS=Oryza sati... [more]
ILL1_ORYSJ2.983e-1552.78IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sati... [more]
ILL1_ORYSI2.983e-1552.78IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sati... [more]
ILL5_ORYSJ5.089e-1550.79IAA-amino acid hydrolase ILR1-like 5 OS=Oryza sati... [more]
ILL4_ARATH3.298e-1444.29IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionEST0048 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ062 similar to IAA amino acid conjugate hydrolase (acc# AAL47552), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250275 ID=CB250275; Name=CB250275; organism=Citrus sinensis; type=EST; length=376bp
AATTATAGGGTGGTTCCACCAATGATGGGGGCAGAGGACTTCTCTTTTTA
CTCAGAGGTGGTTCCTGCAGCCTTCTACTACATCGGAATAAAAAACGAGA
CCTTGGGTTCAATACATACAGGACATTCACCCTATTTTATGATAGATGAA
GATGTTCTACCTGTAGGTGCTGCAGTTCATGCAACTATTGCAGAAAGATT
TCTAAATGAGTATGGACAAGGCTGGAAAAATTGGCTGTAGCTTAAGCCAA
TAGAGCAGGAAGTATTTAATCAAAGAGCAAGACTTATACTAACTTGTGCT
CCCTTATTTTTGGTGCACTTGGCAGTTAAAGGGCATAATCTACCGCAGAT
AGGTTAAAGACCCTAGTTTTTTGGTG
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