CB250285

Overview
NameCB250285
Unique NameCB250285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3327 contig Csv1_Contig3327:221..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB250285 vs. ExPASy Swiss-Prot
Match: TL15A_ARATH (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 5.667e-65
Identity = 123/151 (81.46%), Postives = 128/151 (84.77%), Query Frame = 1 
Query:    1 FFVDPALAFKGGGPYGAEVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGXXXXXXXXXXXXXXXXNVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNATRDTLLCN 453
            FFVDPALAFKGGGPYG  VTRGQDL+GKDFSG+TLI+QDFKTSILRQANFKGAKLLGASFFDADLTG                NVTK NL+NANLEGA  TGNTSF+GSNITGADFTDVPLRDDQR YLCKVADGVN TTGNATRDTLLCN
Sbjct:   74 FFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224
The following BLAST results are available for this feature:
BLAST of CB250285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TL15A_ARATH5.667e-6581.46Thylakoid lumenal 15 kDa protein 1, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionEST0061 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ079 similar to thylakoid lumen pentapeptide 15 kDa protein (acc# NP_566030), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250285 ID=CB250285; Name=CB250285; organism=Citrus sinensis; type=EST; length=472bp
TTCTTCGTTGATCCTGCTCTGGCATTTAAGGGGGGAGGTCCATATGGAGC
CGAAGTGACAAGGGGTCAAGATCTTACAGGAAAGGACTTCAGTGGCAAGA
CTTTGATCAAGCAAGACTTCAAAACGTCTATATTGAGACAAGCCAATTTT
AAGGGTGCCAAGTTACTGGGTGCTAGCTTCTTTGATGCTGATTTAACAGG
GGCTGATCTTTCAGATGCTGATCTCAGAAGTGCAGACTTCTCATTGGCAA
ATGTGACAAAGGCAAACTTGAGTAATGCTAACTTGGAAGGTGCTCTTGCT
ACTGGCAACACATCTTTCAGGGGATCGAATATAACTGGAGCTGACTTCAC
CGACGTGCCTTTGAGAGATGATCAACGGGAATATCTTTGCAAAGTTGCAG
ATGGGGTAAATCCGACAACCGGAAATGCAACCCGGGACACATTGCTCTGC
AACTAGAATTTCATTTCCTTGG
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