CB250317

Overview
NameCB250317
Unique NameCB250317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: AGT23_ARATH (Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 1.733e-80
Identity = 135/161 (83.85%), Postives = 151/161 (93.79%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            ARLYTGCNDI+SLRN+YHGNAA TMGATAQSNWKFNVVQ+GVHHA+NPDPYRG+FG+DGE YA DV DLI FGTSG VAGF+ ESIQGVGGI+ELAPGYLPA Y  ++KAGG+CIADEVQ+GFARTG+HFWGF++HGV+PDIVTMAKGIGNGIPLGAVVTT
Sbjct:  179 ARLYTGCNDIVSLRNSYHGNAAATMGATAQSNWKFNVVQSGVHHAINPDPYRGIFGSDGEKYASDVHDLIQFGTSGQVAGFIGESIQGVGGIVELAPGYLPAAYDIVRKAGGVCIADEVQSGFARTGTHFWGFQSHGVIPDIVTMAKGIGNGIPLGAVVTT 339          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: AGT22_ARATH (Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=AGT3 PE=2 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 2.051e-73
Identity = 128/161 (79.50%), Postives = 144/161 (89.44%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            A+LYTGC DI+++RN YHGNAA TMGAT QS WKFNVVQ  VHHALNPDPYRGVFG+DGE YAKD+QDLI +GT+GH+AGF+ E+IQGVGGI+ELAPGYL A Y ++KKAGGL IADEVQ+GFARTG +FWGFEAH VVPDIVTMAKGIGNG PLGAVVTT
Sbjct:  176 AKLYTGCQDIVAVRNGYHGNAAATMGATGQSMWKFNVVQNSVHHALNPDPYRGVFGSDGEKYAKDLQDLIQYGTTGHIAGFICEAIQGVGGIVELAPGYLSAAYDTVKKAGGLFIADEVQSGFARTG-NFWGFEAHNVVPDIVTMAKGIGNGFPLGAVVTT 335          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: AGT21_ARATH (Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=AGT2 PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 2.969e-64
Identity = 110/161 (68.32%), Postives = 136/161 (84.47%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTGVHHALNPDPYRGVFGADGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            ARLYTG  ++ISLRNAYHG ++ T+G TA + WK+ + Q  +HH +NPDPYRGVFG+DG +YAKDV D I++GTSG VAGF++E+IQGVGG +ELAPGYL +VY+ ++ AGG+CIADEVQ GF RTGSH+WGF+   VVPDIVTMAKGIGNG+PLGAVVTT
Sbjct:  174 ARLYTGSLEMISLRNAYHGGSSNTIGLTALNTWKYPLPQGEIHHVVNPDPYRGVFGSDGSLYAKDVHDHIEYGTSGKVAGFIAETIQGVGGAVELAPGYLKSVYEIVRNAGGVCIADEVQTGFGRTGSHYWGFQTQDVVPDIVTMAKGIGNGLPLGAVVTT 334          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: AGT2_RAT (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Rattus norvegicus GN=Agxt2 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 4.182e-34
Identity = 77/184 (41.85%), Postives = 103/184 (55.98%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQT-GVHHALNPDPYRGVFGA------------------DG----EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            AR Y+   DIIS R AYHG +  T+G T    +K  V  T      + PD +RG +G                   DG    E Y +  +D ++   +  +AGF +E IQGV G+++    +L   +  +++ GG+CIADEVQ GF R GSHFWGF+ H  +PDIVTMAKGIGNG P+ AVVTT
Sbjct:  179 ARAYSNHTDIISFRGAYHGCSPYTLGLTNVGIYKMKVPSTIACQSTMCPDVFRGPWGGSHCRDSPVQTVRKCSCAPDGCQAKERYIEQFKDTLNTSVATSIAGFFAEPIQGVNGVVQYPKEFLKEAFALVRERGGVCIADEVQTGFGRLGSHFWGFQTHDTMPDIVTMAKGIGNGFPMAAVVTT 362          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: AGT2_HUMAN (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.182e-34
Identity = 74/184 (40.22%), Postives = 103/184 (55.98%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-TGVHHALNPDPYRGVFGADG----------------------EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            AR ++   DIIS R AYHG +  T+G T    +K  +   TG    + PD +RG +G                         + Y +  +D +    +  +AGF +E IQGV G+++   G+L   ++ ++  GG+CIADEVQ GF R GSHFWGF+ H V+PDIVTMAKGIGNG P+ AV+TT
Sbjct:  181 ARAHSNNIDIISFRGAYHGCSPYTLGLTNVGTYKMELPGGTGCQPTMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVITT 364          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: AGT2_BOVIN (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Bos taurus GN=AGXT2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.217e-33
Identity = 73/184 (39.67%), Postives = 103/184 (55.98%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-TGVHHALNPDPYRGVFGADG----------------------EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            AR ++   DIIS R AYHG +  T+G T    +K ++    G    + PD + G +G                         + Y +  +D +    +  +AGF +E IQGV G+++   G+L   ++ +++ GG+CIADEVQ GF R GSHFWGF+ H V+PDIVTMAKGIGNG P+ AVVTT
Sbjct:  181 ARAHSNSTDIISFRGAYHGCSPYTLGLTNVGIYKMDLPHGMGCQPTMCPDIFHGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRERGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVVTT 364          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: AGT2_MOUSE (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Mus musculus GN=Agxt2 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.540e-33
Identity = 75/184 (40.76%), Postives = 102/184 (55.43%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-TGVHHALNPDPYRGVFGA----------------------DGEMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            AR ++   DIIS R AYHG +  T+G T    +K  V    G    + PD +RG +G                         E Y +  +D ++   +  +AGF +E IQGV G+++    +L   +  +++ GG+CIADEVQ GF R GSHFWGF+ H V+PDIVTMAKGIGNG P+ AVVTT
Sbjct:  180 ARAHSNHTDIISFRGAYHGCSPYTLGLTNVGIYKMEVPGGIGCQSTMCPDVFRGPWGGIHCRDSPVQTVRDCSCAPDCCQAKERYIEQFKDTLNTSVATSIAGFFAEPIQGVNGVVQYPKEFLKEAFALVRERGGVCIADEVQTGFGRLGSHFWGFQTHDVLPDIVTMAKGIGNGFPMAAVVTT 363          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: AGT2_PONAB (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Pongo abelii GN=AGXT2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.757e-32
Identity = 74/184 (40.22%), Postives = 102/184 (55.43%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQ-TGVHHALNPDPYRGVFGADG----------------------EMYAKDVQDLIDFGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            AR ++   DIIS R AYHG +  T+G T    +K  +   TG    + PD +RG +G                         + Y +  +D +    +  +AGF +E IQGV G+++   G+L   ++ ++  GG+CIADEVQ GF R GSHF GF+ H V+PDIVTMAKGIGNG P+ AVVTT
Sbjct:  181 ARAHSNNIDIISFRGAYHGCSPYTLGLTNIGTYKMELPGGTGCQPTMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKSIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFRGFQTHDVLPDIVTMAKGIGNGFPMAAVVTT 364          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: AGT2L_DROME (Alanine--glyoxylate aminotransferase 2-like OS=Drosophila melanogaster GN=CG8745 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.644e-30
Identity = 80/177 (45.20%), Postives = 104/177 (58.76%), Query Frame = 2
Query:    2 ARLYTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG-------VHHALNPDPYRGVF------GAD-GEMYAKDVQDLID--FGTSGHVAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHGVVPDIVTMAKGIGNGIPLGAVVTT 484
            AR +T   D+I+L +AYHG+    M     S +KFN  Q G       VH A  PD Y G F       AD G +YA+ ++++          VA F++ES+Q  GG I    GY  AVY +++ AGG+CIADEVQ GF R GSH+W FE   V+PDIV +AK +GNG P+GAVVTT
Sbjct:  134 ARNFTKRQDVITLDHAYHGHLQSVMEV---SPYKFN--QPGGEAKPDYVHVAPCPDVYGGKFTDKMYPDADMGALYAQPIEEICQKQLAKGQGVAAFIAESLQSCGGQILPPAGYFQAVYDAVRSAGGVCIADEVQVGFGRVGSHYWAFETQNVIPDIVCVAKPMGNGHPVGAVVTT 305          
BLAST of CB250317 vs. ExPASy Swiss-Prot
Match: AT2L1_DANRE (Alanine--glyoxylate aminotransferase 2-like 1 OS=Danio rerio GN=agxt2l1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.392e-29
Identity = 75/171 (43.86%), Postives = 104/171 (60.82%), Query Frame = 2
Query:   11 YTGCNDIISLRNAYHGNAAGTMGATAQSNWKFNVVQTG-----VHHALNPDPYRGVFGAD----GEMYAKDVQDLIDFG-TSGH-VAGFLSESIQGVGGIIELAPGYLPAVYKSIKKAGGLCIADEVQAGFARTGSHFWGFEAHG--VVPDIVTMAKGIGNGIPLGAVVTT 484
            YTG  DII+L NAYHG+ +  +     S +KF+ +        VH AL+PD YRG +  D       YA++V+++I+     GH +A F++ES+Q  GG +    GY   V + ++ AGG+ IADEVQ GF R G+HFWGF+  G   VPDIVTM K IGNG P+  V+T+
Sbjct:  127 YTGHKDIITLDNAYHGHVSSLIDI---SPYKFHQMAGAEPSQHVHVALSPDTYRGKYREDHPDPATAYAENVKEVIEEAHKKGHEIAAFIAESLQSCGGQVIPPMGYFQKVAQHVRNAGGIFIADEVQVGFGRVGTHFWGFQLQGEDFVPDIVTMGKPIGNGHPMSCVITS 294          
The following BLAST results are available for this feature:
BLAST of CB250317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
AGT23_ARATH1.733e-8083.85Alanine--glyoxylate aminotransferase 2 homolog 3, ... [more]
AGT22_ARATH2.051e-7379.50Alanine--glyoxylate aminotransferase 2 homolog 2, ... [more]
AGT21_ARATH2.969e-6468.32Alanine--glyoxylate aminotransferase 2 homolog 1, ... [more]
AGT2_RAT4.182e-3441.85Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_HUMAN4.182e-3440.22Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_BOVIN1.217e-3339.67Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_MOUSE3.540e-3340.76Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2_PONAB1.757e-3240.22Alanine--glyoxylate aminotransferase 2, mitochondr... [more]
AGT2L_DROME1.644e-3045.20Alanine--glyoxylate aminotransferase 2-like OS=Dro... [more]
AT2L1_DANRE1.392e-2943.86Alanine--glyoxylate aminotransferase 2-like 1 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionEST0102 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ143 similar to putative aminotransferase (acc# NP_187498), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250317 ID=CB250317; Name=CB250317; organism=Citrus sinensis; type=EST; length=485bp
GGCAAGATTATATACCGGATGCAATGACATAATATCACTGAGAAACGCCT
ATCATGGAAACGCAGCTGGAACTATGGGTGCCACTGCTCAGTCCAACTGG
AAATTTAACGTTGTTCAGACTGGCGTTCATCATGCCTTGAACCCCGACCC
ATACAGAGGCGTGTTTGGTGCGGATGGCGAAATGTATGCTAAAGATGTTC
AAGATCTCATTGACTTTGGAACTTCTGGGCATGTTGCTGGTTTCCTTTCT
GAATCTATTCAGGGAGTGGGTGGCATTATAGAGTTGGCCCCAGGTTACCT
GCCTGCGGTTTATAAAAGCATTAAGAAAGCGGGAGGCCTTTGTATAGCTG
ATGAGGTTCAGGCTGGATTTGCCCGAACAGGGAGCCATTTCTGGGGATTT
GAGGCCCATGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGCATTGG
AAATGGTATCCCCCTTGGTGCAGTAGTAACTACTC
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