CB250350

Overview
NameCB250350
Unique NameCB250350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig119 contig Csv1_Contig119:1..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB250350 vs. ExPASy Swiss-Prot
Match: BRM_ARATH (ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.688e-57
Identity = 123/229 (53.71%), Postives = 154/229 (67.25%), Query Frame = 1 
Query:    1 TKEVDATIANLSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQXXXXXXXXXXXXXYSGAVGAPPSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVER 684
            T+EV+AT+A+LSKKPSKN+L  SN+ V  G    ERKRG PK KK  NYKE++D+I  YSE SS+ERN                   +GA+G   +NK + + + PVC  GYDY   S + + N   ++A          R  ++ SPVS QKFGSLSAL+ RPGS+SKR+ D+LEEGEIA SGDSH+D Q+SGSW HDRDEG++EQVLQP IKRKRSIR+RPR T ER
Sbjct: 1572 TREVNATVADLSKKPSKNMLSSSNLIVQPGGPGGERKRGRPKSKKI-NYKEIEDDIAGYSEESSEERNIDSGNEEEGDIRQFDDDELTGALGDHQTNKGEFDGENPVC--GYDYPPGSGSYKKNPPRDDAGSSGSSPESHRSKEMASPVSSQKFGSLSALDTRPGSVSKRLLDDLEEGEIAASGDSHIDLQRSGSWAHDRDEGDEEQVLQPTIKRKRSIRLRPRQTAER 1797
The following BLAST results are available for this feature:
BLAST of CB250350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BRM_ARATH6.688e-5753.71ATP-dependent helicase BRM OS=Arabidopsis thaliana... [more]
back to top
Properties
Property NameValue
Genbank descriptionEST0143 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ210 similar to putative SNF2 subfamily transcriptional activator (acc# NP_182126), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250350 ID=CB250350; Name=CB250350; organism=Citrus sinensis; type=EST; length=749bp
ACAAAGGAAGTGGATGCTACTATTGCTAATTTATCCAAAAAGCCATCAAA
GAATATTTTGTTTGGTAGCAATATTGGTGTGGATTCTGGTGAAATTGAAA
CAGAAAGAAAAAGGGGACCCAAGGGGAAAAAGTATCCTAATTACAAGGAA
GTTGATGATGAAATTGGAGAATATTCTGAAGCAAGCTCTGATGAGAGGAA
TGGATATCCTGTGCAGGAAGAAGAGGGAGAAATTGGAGAGTTTGAAGATG
ATGAATACAGTGGTGCTGTTGGGGCACCACCGAGTAACAAAGACCAATCA
GAAGAAGATGGTCCAGTTTGCGAAGGTGGTTATGACTATCTCCGGCCTTC
AGAAAACACAAGAAACAATCATGTAGTTGAGGAAGCTGGTTCTTCAGGAT
CATCTTCGAACAGTCGAAGATTGACACAGATAGTATCTCCTGTTTCCCCT
CAGAAATTTGGGTCTCTGTCTGCATTAGAAGCTAGGCCAGGTTCTCTTTC
AAAGAGGATGCCAGATGAGTTAGAAGAGGGAGAGATTGCAGTATCTGGAG
ATTCTCACATGGACCACCAGCAATCTGGAAGTTGGACTCATGATCGTGAC
GAAGGTGAAGATGAACAGGTTTTGCAGCCTAAGATCAAACGAAAGCGTAG
TATTCGAGTTCGACCCCGTCATACTGTTGAAAGGCCAGAGGAGAGGTCTT
GCACCGACACACCTCTCCATCGCGGTGATTCATCTCTCTTGCCCTTCCA
back to top