CB290241

Overview
NameCB290241
Unique NameCB290241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig126 contig Csv1_Contig126:1..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB290241 vs. ExPASy Swiss-Prot
Match: USPAL_ARATH (Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.815e-68
Identity = 121/165 (73.33%), Postives = 143/165 (86.67%), Query Frame = 3 
Query:   66 MEGEPTRIIVAVNESTPKGYPHASIISRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDGFDDMDSIYASPEDFRRMQHRDKVRGLHLLEYFVNRCHEIGVACEAWIKKGDPKEVICREVQRVQPDLLVVGSRGLGPFQRVFVGTVSEFCVKHAECPVITIKRRA 560
            M  EPT+++VAVN ST K YP+ SI  + AFEW+++KI+RSNTS FK+L LHVQV DEDGFDD+DSIYASPEDFR M+  +K +GLHLLE+FVN+CHEIGV CEAWIK GDPK+VIC+EV+RV+PD LVVGSRGLG FQ+VFVGTVS FCVKHAECPV+TIKR A
Sbjct:    1 MGSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKRNA 165
The following BLAST results are available for this feature:
BLAST of CB290241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
USPAL_ARATH1.815e-6873.33Universal stress protein A-like protein OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ac05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ac05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290241 ID=CB290241; Name=CB290241; organism=Citrus sinensis; type=EST; length=783bp
GTCCTTGGGAGAGAGAAAAGAGAGTGTCTGAGTTGAATTGAGCTGGTCAC
ACTGAGCGAGTGAAAATGGAAGGCGAGCCGACTCGGATAATAGTGGCGGT
GAACGAGTCGACCCCAAAAGGTTACCCGCACGCGTCGATTATCAGCAGAG
GAGCGTTCGAGTGGAGCGTGCAGAAGATCATTCGCTCTAACACTTCTGGC
TTCAAGCTTCTCTTTCTCCACGTCCAGGTTCCCGATGAAGATGGTTTTGA
TGATATGGATAGCATATATGCATCTCCTGAAGATTTCAGACGCATGCAGC
ACAGGGACAAAGTGAGAGGACTTCATCTTCTGGAGTATTTTGTCAACAGA
TGTCATGAGATTGGGGTAGCTTGTGAAGCATGGATTAAGAAAGGAGATCC
CAAAGAAGTAATCTGCCGCGAAGTGCAACGTGTCCAGCCAGATCTCCTGG
TTGTGGGAAGTCGGGGACTTGGTCCTTTTCAGAGGGTCTTTGTTGGGACT
GTGAGTGAATTTTGTGTGAAGCATGCTGAGTGCCCTGTGATAACCATTAA
ACGTAGGGCAGATGAAACTCCTGAGGACCCTGTTGATGACTGAACTGATC
ACTATCTCAATATTTTTCATCCTGTTGATAAACTTTGGACAGAAAACGTT
AGTTGGGGGAGATATTAAATGTACTGCTTAGAAATACTTGTCTATTTGTT
GAGAATATATTGCCTGGACGAATATGCTTTGTAATCTGTTAAATGGGTCC
GCCTAAGTTACATTCAATGTAACTTACGGCCAG
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