CB290252

Overview
NameCB290252
Unique NameCB290252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:403..1244. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.252e-61
Identity = 119/190 (62.63%), Postives = 132/190 (69.47%), Query Frame = -1
Query:  274 YVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWD-YSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKAPAT 840
            YV+NL KQ+VGTEL DGKSLE++++ SYNKGD+LPAFNNAAQ WNHDFFW                 LIERDFGS            ATQFGSGWAWL Y+            P P E D  L+V+K+PNAVNPLVW  Y PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSW++VS RLE AKA  T
Sbjct:   59 YVENLKKQVVGTEL-DGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFVKFLDEFKAAAATQFGSGWAWLAYRARKFDGENVANPPSPDE-DNKLVVLKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQAKALIT 246          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.529e-55
Identity = 112/187 (59.89%), Postives = 126/187 (67.38%), Query Frame = -1
Query:  283 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 843
            AYVDNLNKQI GTEL DGK+LED+++ +YNKG  LPAFNNAAQAWNH FFW                 LI RDFGS            ATQFGSGWAWL YK                 ++K L +VKTPNA NPLV  Y+PLLTIDVWEHAYYLDFQNRRPDYIS+FM+KLVSWE+VS RL++A A
Sbjct:   33 AYVDNLNKQIDGTEL-DGKTLEDIILVTYNKGAPLPAFNNAAQAWNHQFFWESMKPNGGGEPSGELLELINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYKP----------------EEKKLALVKTPNAENPLVLGYTPLLTIDVWEHAYYLDFQNRRPDYISIFMEKLVSWEAVSSRLKAATA 202          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 201.83 bits (512), Expect = 3.896e-51
Identity = 106/187 (56.68%), Postives = 120/187 (64.17%), Query Frame = -1
Query:  283 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 843
            AYVDNL KQ++GTEL +GK LE ++ ++YN GDLLPAFNNAAQAWNH+FFW                 L+ERDF S            ATQFG+GWAWL Y                   ++ L VVKTPNAVNPLV    PLLTIDVWEHAYYLDFQNRRPDYI  FM  LVSWE+VS RLE+AKA
Sbjct:   42 AYVDNLKKQVLGTEL-EGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYS------------------NEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 1.139e-34
Identity = 81/185 (43.78%), Postives = 100/185 (54.05%), Query Frame = -1
Query:  289 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 843
            AYV+N N  + GT+L D +S+EDV+ A          FNNAAQAWNH F+W                  I  DFGS            ATQFGSGWAWLV                    + +L V KT NA NP+    +PLLT+DVWEHAYYLD+QNRRPDYI+ F+ KLV+W+ V+  L +A
Sbjct:   34 AYVNNFNNAVAGTDL-DNQSIEDVIKAVAGDASKAGIFNNAAQAWNHSFYWNCMKPGGGGQPSGALADKINADFGSFDAFVEAFKQAGATQFGSGWAWLVLD------------------NGTLKVTKTGNAENPMTAGQTPLLTMDVWEHAYYLDYQNRRPDYIADFLGKLVNWDFVAANLAAA 199          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.314e-34
Identity = 81/182 (44.51%), Postives = 97/182 (53.30%), Query Frame = -1
Query:  298 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 843
            AYV NLNK + GT + +  SLEDV+  S+     +  FNNAAQ WNH FFW                  I+  FGS            ATQFGSGWAWLV                  +   +L V KTPNA NPLV    PLLT+DVWEHAYYLDFQN RP +I  F+D LV+W+ V++ L
Sbjct:   35 AYVTNLNKLVEGTPM-ESLSLEDVIKQSFGDSSKVGVFNNAAQVWNHTFFWNCLKAGGGGAPTGELAAKIDAAFGSLDKFKEEFSNAAATQFGSGWAWLV------------------DDGGTLKVTKTPNAENPLVHGQKPLLTLDVWEHAYYLDFQNARPAFIKNFLDNLVNWDFVAQNL 197          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 6.249e-33
Identity = 77/176 (43.75%), Postives = 93/176 (52.84%), Query Frame = -1
Query:  316 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 843
            AYVDNLNK   GTEL D KSLE+V+  ++        FNNAAQ WNH FFW                  I +DFGS            ATQFGSGWAWL+                  +   +L V KTPNA NPL      LLT+DVWEHAYY+DF+N RP +I  ++D LV+W+
Sbjct:   35 AYVDNLNKLTDGTELAD-KSLEEVIQIAFKDASKAGIFNNAAQVWNHTFFWNSLKPAGGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWLI------------------DDGGTLKVTKTPNAENPLAHGQKALLTLDVWEHAYYIDFRNARPAFIKNYLDNLVNWD 191          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.290e-32
Identity = 78/187 (41.71%), Postives = 96/187 (51.34%), Query Frame = -1
Query:  283 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 843
            AYV+N N  +  T+L DG+ +E V+ A          FNNAAQAWNH F+W                  I  DFGS            ATQFGSGWAWLV                    + +L + KT NA  P+    +PLLTIDVWEHAYYLD+QNRRPDYIS F++KL +W+  S    +A A
Sbjct:   34 AYVNNYNNAVKDTDL-DGQPIEAVIKAIAGDASKAGLFNNAAQAWNHSFYWNSIKPNGGGAPTGALADKIAADFGSFENFVTEFKQAAATQFGSGWAWLVLD------------------NGTLKITKTGNADTPIAHGQTPLLTIDVWEHAYYLDYQNRRPDYISTFVEKLANWDFASANYAAAIA 201          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.849e-31
Identity = 75/184 (40.76%), Postives = 100/184 (54.35%), Query Frame = -1
Query:  298 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA--FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 843
            AYVDN NK I GTE  +GKS+E++V  +Y  G +  +  FNNA+Q WNH  FW                  +   FGS            A QFGSGWAWLV                  + D +L + KT N VNPL +  + LL  DVWEH+YY+DF+N+RP Y++ F+DKLV+WE+V+ R+
Sbjct:   35 AYVDNGNKLIAGTEW-EGKSVEEIVKGTYCAGAVAQSGIFNNASQHWNHAQFWEMMGPGEDKKMPGALEKALVESFGSVAKFKEDFAAAGAGQFGSGWAWLV-----------------KDSDGALKITKTENGVNPLCFGQTALLGCDVWEHSYYIDFRNKRPAYLTNFLDKLVNWENVASRM 200          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.593e-28
Identity = 68/182 (37.36%), Postives = 89/182 (48.90%), Query Frame = -1
Query:  298 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 843
            AYV NLN  +   E    K+LE+++  S ++   +  FNNAAQ WNH FFW                  I  DFGS              QFGSGWAWLVY                   +  L +VKT NA  P+     PLL  DVWEHAYY+D++N+RPDY+ +F+  +++WE V   L
Sbjct:   45 AYVQNLNNLLKDKEELQKKNLEEIIDWS-SQNQNIAIFNNAAQVWNHTFFWHSIKPNGGGKPSGKILKQINEDFGSFEEFCEQFKAEATGQFGSGWAWLVYH------------------NNRLQIVKTANAGTPIANGMQPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWEFVENNL 207          
BLAST of CB290252 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.548e-28
Identity = 67/182 (36.81%), Postives = 87/182 (47.80%), Query Frame = -1
Query:  298 AYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXGLIERDFGSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 843
            AYV NLN  +   E    K LE+++  S    +    FNNAAQ WNH FFW                  I +DFGS              QFGSGWAWLVY                   D  L ++KT NA  P+     PLL  DVWEHAYY+D++N+RPDY+ +F+  +++W+ V   L
Sbjct:   45 AYVQNLNNLLKDKEELQKKDLEEIIEWSSQNSNAA-IFNNAAQIWNHSFFWHSIKPQGGGKPSGKILEQINKDFGSFEGFCEQFKQEAVGQFGSGWAWLVYH------------------DNRLQIIKTANAGTPIANGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVEDNL 207          
The following BLAST results are available for this feature:
BLAST of CB290252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODF_SOYBN9.252e-6162.63Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_NICPL1.529e-5559.89Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ARATH3.896e-5156.68Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_SYNY31.139e-3443.78Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_PLEBO3.314e-3444.51Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_ANASP6.249e-3343.75Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_SYNE75.290e-3241.71Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_RHOCA5.849e-3140.76Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODF_RICBR1.593e-2837.36Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODF_RICFE3.548e-2836.81Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290252 ID=CB290252; Name=CB290252; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTTTTTTATATTAGTCATCCAAAAACTATTTTCAAAAAGT
AACTCATACATATACTTTGATAGGTTTTATTATACCCTGATTGTTATAAG
AAGAAACCAACACTTTGACAATAGAGATTACTAATCACAAAGTAGTGTGT
ACCAAAGACCTAACTATTTTTATTGTTCAGCAAAGTATCATCAGCACAAC
ATAGTGTTGCTACCAAGCAGCTTATTATTTATTTTCTCTTCATCTTCCTT
CATCATTCTTCCATTTCAATCTAGGTAGCTGGAGCTTTGGCTGATTCCAG
TCTTTTACTTACTGATTCCCATGATACAAGCTTATCCATGAAAACTGATA
TGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAATAAGCATGCTCCCAT
ACATCAATAGTAAGGAGCGGCGAGTAATCCCAGACAAGAGGATTGACAGC
ATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCTTCTCCGATGGAAGAG
GATTCACCGCATTAGCCACATCAGCTCTATTATTGGCTTTGTATACAAGC
CAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGCCGCCTTGAATTCCTC
AAGAAATTTTTCAAAAGAACCAAAATCCCTTTCAATCAGTCCTAGAAGTT
CACCAGACGGCTTTCCGCCACCACCCGGTTTCATGGATTCCCAGAAGAAG
TCATGGTTCCACGCCTGTGCAGCATTATTGAAAGCTGGAAGCAAGTCACC
CTTGTTGTAAGAAGCAATAACGACATCTTCCAATGACTTTCCATCACCAA
GCTCAGTTCCAACAATTTGCTTGTTGAGGTTATCCACATAAGC
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