CB290256

Overview
NameCB290256
Unique NameCB290256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig127 contig Csv1_Contig127:1..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290256 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 56/161 (34.78%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  327 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM 794
            L+ V ++V LPL  VS  N                   V+GV + VWWG+ E++   +Y+WS Y ++ ++V++ GLKL   + FH           IP+P WV  IGES   IFYT++SG + K  L++ VD+ P+  G+T I+VY ++ +SF+ +   F+
Sbjct:   10 LNYVPVYVMLPLGVVSVNNVFEDPEGLKEQLVQLREAGVDGVMVDVWWGIIEQKGPKQYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVNIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLTIGVDNKPIFHGRTAIEVYSDYMKSFRENMSDFL 170          
BLAST of CB290256 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.098e-23
Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  327 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM 794
            L+ V ++V LPL  ++  N                   V+GV + VWWG+ E++   +Y+WS Y ++ ++V++ GLKL   + FH           IP+P WV  IGES   IFYT++SG + K  L++ VD+ P+  G+T I++Y ++ +SF+ +   F+
Sbjct:   10 LNYVPVYVMLPLGVINVNNVFEDPDGLKEQLVQLRAAGVDGVMVDVWWGIIEQKGPKEYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVTIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLTVGVDNKPIFHGRTAIEIYSDYMKSFRENMSEFL 170          
BLAST of CB290256 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.352e-23
Identity = 54/161 (33.54%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  327 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM 794
            L+ V ++V LPL  ++  N                   V+GV + VWWG+ E++   +Y+WS Y ++ ++V+K GLKL   + FH           IPLP WV  IGES   IFYT++SG + +  LS+ VD+ P+  G+T I++Y ++ +SF+ +    +
Sbjct:   10 LNYVPVYVMLPLGVINVNNVFEDPDGLKEQLVQLRAAGVDGVMIDVWWGIIEQKGPKEYDWSAYKSLFQLVQKCGLKLQAIMSFHQCGGNVGDVVNIPLPKWVLDIGESDPDIFYTNRSGIRNQEYLSIGVDNKPIFHGRTAIEIYSDYMKSFRENMSDLL 170          
BLAST of CB290256 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.469e-22
Identity = 54/158 (34.18%), Postives = 82/158 (51.90%), Query Frame = 3
Query:  336 VRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM 794
            V+++V LPLD VS  N                   V+GV + VWWG+ E +    Y+WS Y  V ++V + GLKL   + FH           IP+P WV  +G +   IFYT++ G +    L+L VDD P+  G+T +Q+Y ++  SF+ + K F+
Sbjct:   10 VQVYVMLPLDVVSVDNKFEKGDEIRAQLKKLTEAGVDGVMIDVWWGLVEGKGPKAYDWSAYKQVFDLVHEAGLKLQAIMSFHQCGGNVGDVVNIPIPQWVRDVGATDPDIFYTNRGGTRNIEYLTLGVDDQPLFHGRTAVQMYADYMASFRENMKKFL 167          
BLAST of CB290256 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.469e-22
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  336 VRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM 794
            V+++V LPLD ++  NT                   +GV + VWWG+ E +  G Y+WS Y  V ++V++ GLKL   +  H           IP+P WV  +G+S   IFYT++SG      L+L VDD P+  G+T IQ+Y ++ +SF+ +   F+
Sbjct:   10 VQVYVMLPLDVITVDNTFEKEDETRAQLKKLTEAGADGVMIDVWWGLVEGKEPGVYDWSAYRQVFKLVQEAGLKLQAIMSCHQCGGNVGDVVNIPIPQWVRDVGKSNPDIFYTNRSGLTNIEYLTLGVDDQPLFHGRTAIQLYADYMKSFRENMADFL 167          
BLAST of CB290256 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.009e-21
Identity = 54/158 (34.18%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  336 VRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM 794
            V+++V LPLD VS  N                   V+GV + VWWG+ E +    Y+WS Y  + E+V+K GLKL   + FH           IP+P WV  +G     IFYTD  G +    L+L VD+ P+  G++ +Q+Y ++  SF+ + K F+
Sbjct:   10 VQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFL 167          
BLAST of CB290256 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.009e-21
Identity = 54/158 (34.18%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  336 VRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM 794
            V+++V LPLD VS  N                   V+GV + VWWG+ E +    Y+WS Y  + E+V+K GLKL   + FH           IP+P WV  +G     IFYTD  G +    L+L VD+ P+  G++ +Q+Y ++  SF+ + K F+
Sbjct:   10 VQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFL 167          
BLAST of CB290256 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.722e-21
Identity = 52/161 (32.30%), Postives = 86/161 (53.42%), Query Frame = 3
Query:  327 LDAVRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQP-----KIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM 794
            L+ V ++V LPL  V+  N                   V+GV + VWWG+ E +   +Y+W  Y ++ ++V++ GL L   + FH           IP+P WV  IGES   IFYT++SG + K  L++ VD+ P+  G+T I++Y ++ +SF+ +   F+
Sbjct:   10 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFL 170          
BLAST of CB290256 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 51/158 (32.28%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  336 VRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHAL-----KQPKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSSFKPFM 794
            V L+V LPL  V+  N                    +GV + VWWG+ E +   +Y+WS Y  + ++V+K GLK+   + FH           IP+P W+ QIG+    IFYT+++G + +  LSL VD+  +  G+T +++Y++F ESF+ +   F+
Sbjct:   14 VSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFL 171          
BLAST of CB290256 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.124e-19
Identity = 47/157 (29.94%), Postives = 84/157 (53.50%), Query Frame = 3
Query:  327 LDAVRLFVGLPLDTVSDANT-VNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFHALKQP-----KIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAVDDLPVLDGKTPIQVYQEFCESFKSS 779
            L+ V ++V LPL  V+  N   +                V+GV + VWWG+ E +   +Y+W+ Y  + +++ ++GLK+   + FH           IP+P WV  +G++   I+YT++ G +    LS+ VD+LP+  G+T +Q+Y ++  SFK +
Sbjct:   11 LNYVPVYVMLPLGVVNVENVFADPETLETQLKRLKEEAGVDGVMVDVWWGIIESKGPKQYDWTAYKTLFQLIARLGLKIQAIMSFHQCGGNVGDIVTIPIPQWVRDVGDNDPDIYYTNRKGTRDIEYLSIGVDNLPLFAGRTAVQLYSDYMSSFKEN 167          
The following BLAST results are available for this feature:
BLAST of CB290256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AMYB_VIGUN6.322e-2434.78Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_TRIRP4.098e-2332.92Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_MEDSA5.352e-2333.54Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_WHEAT3.469e-2234.18Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_MAIZE3.469e-2234.18Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_HORVU1.009e-2134.18Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP1.009e-2134.18Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_SOYBN1.722e-2132.30Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_IPOBA5.009e-2132.28Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_ARATH6.124e-1929.94Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290256 ID=CB290256; Name=CB290256; organism=Citrus sinensis; type=EST; length=797bp
GCCCGTGGAAAAAGTTTGCTTTCTATTGCGTTTAATTCGCAGACCTAGGG
TGATTATTGGAAATGGAGGTTTCTCTGATGGGTAATTCTCAGGCTAATGT
TGTTAAGACGGGACTACCGTACAGAGACTCGAGGGTTTGTTGTTCGTACA
AGAACAAGATTGATGATAAGGTCTTGTTCGTTAACCGTGTTAGTTTTCTG
GGTCAAAACCGAAGTGCAAATCTGAGAAAAGCTCAGCTTCGATTTTGCAC
CAAAGCTTCTGTTCAATCTCAACCTCTCCCATCCGACAGAGATTCGGGTC
CTTTATCTTCTGCCAGACCCAAATCGCTTGATGCTGTAAGATTATTCGTT
GGGCTTCCCTTGGATACAGTTTCTGATGCCAATACAGTGAACCATGCAAA
AGCTATTGCAGCTGGACTTAAAGCTTTGAAGCTGTTGGGAGTGGAAGGCG
TTGAGCTACCAGTTTGGTGGGGGGTAGCAGAGAAGGAAGCCATGGGAAAG
TACAATTGGTCTGGCTACCTTGCTGTTGCAGAGATGGTTGAAAAAATAGG
TCTCAAGCTTCATGTGTCACTCTGCTTCCATGCTTTGAAACAGCCAAAAA
TTCCGCTCCCCGATTGGGTCTCCCAAATTGGTGAGTCCCAATCAAGCATC
TTTTACACAGATCAGTCAGGGCAGCAATTCAAAGGTTGCCTATCATTGGC
CGTTGATGATCTTCCAGTTCTTGATGGGAAAACTCCAATTCAAGTTTACC
AAGAATTTTGCGAGAGCTTTAAGTCTTCATTCAAGCCTTTCATGGGC
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