CB290258

Overview
NameCB290258
Unique NameCB290258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290258_ssr337 microsatellite CB290258_ssr337:337..348. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INVA_PHAAU (Acid beta-fructofuranosidase OS=Phaseolus aureus GN=INVA PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.086e-70
Identity = 117/163 (71.78%), Postives = 137/163 (84.05%), Query Frame = 2
Query:  338 SSSSKDPERLRPFTSASSAGVSEKSNRRF----GARTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPL 814
            S +S    +  P +   S+GVSEKS+       G  + ++PW N+MLSWQRT+FHFQP+KNWMNDPNGP++YKGWYH FYQYNPNGA+WGDIVWGHAVS+D+IHW HLPLAMVADQWYD  GVWTGSATILP+G+++MLYTGSTNESVQVQNLAYPADPSDPL
Sbjct:   66 SPTSLPSSKWYPVSRGVSSGVSEKSSNLLFAGEGGASEAFPWDNSMLSWQRTSFHFQPEKNWMNDPNGPMYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWLHLPLAMVADQWYDKQGVWTGSATILPNGEIIMLYTGSTNESVQVQNLAYPADPSDPL 228          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INVA_PHAVU (Acid beta-fructofuranosidase OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.035e-69
Identity = 114/146 (78.08%), Postives = 131/146 (89.73%), Query Frame = 2
Query:  389 SAGVSEKSNRRF----GARTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPL 814
            S+GVSEKS+       G  + ++PW N+MLSWQRT+FHFQP+KNWMNDPNGP++YKGWYH FYQYNPNGA+WGDIVWGHAVS+D+IHW HLPLAMVADQWYD  GVWTGSATILP+G+++MLYTGSTNESVQVQNLAYPADPSDPL
Sbjct:   83 SSGVSEKSSSMLFSGEGGASEAFPWDNSMLSWQRTSFHFQPEKNWMNDPNGPMYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWLHLPLAMVADQWYDKQGVWTGSATILPNGEIIMLYTGSTNESVQVQNLAYPADPSDPL 228          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INVA_VICFA (Acid beta-fructofuranosidase OS=Vicia faba GN=VCINV PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.306e-69
Identity = 122/166 (73.49%), Postives = 134/166 (80.72%), Query Frame = 2
Query:  338 SSSSKDPERLRPFTSAS--SAGVSEKSNR-----RFGARTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPL 814
            SSS    E  RP T +   S+GVSEKSN             S+PW N MLSWQRTAFHFQP+KNWMNDPNGP++YKGWYH FYQYNPNGA+WGDIVWGHAVS+DLIHW HLPLAMVADQWYD  GVWTGSATILPDG+++MLYTGSTNE VQVQNLAYPAD +DPL
Sbjct:   55 SSSILSDEATRPTTLSRGVSSGVSEKSNTFLLSGNLVGEGGSFPWNNTMLSWQRTAFHFQPEKNWMNDPNGPLYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDLIHWLHLPLAMVADQWYDSNGVWTGSATILPDGQVIMLYTGSTNEFVQVQNLAYPADLNDPL 220          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INVB_DAUCA (Beta-fructofuranosidase, soluble isoenzyme I OS=Daucus carota GN=INV*DC4 PE=1 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.827e-66
Identity = 113/159 (71.07%), Postives = 133/159 (83.65%), Query Frame = 2
Query:  338 SSSSKDPERLRPFTSASSAGVSEKSNRRFGARTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPL 814
            + +SK PE L P +   S GVSEKS R+  A   SYPWTN+MLSWQRT+FHFQPQ+NWMNDPNGP+F+ GWYHLFYQYNP+ AIWG+I WGHA+S+DLI+W HLP AM  DQWYDI GVWTGSAT+LPDGK++MLYTG T++ VQVQNLAYPA+ SDPL
Sbjct:   86 NKASKSPEMLGPPSRGVSQGVSEKSFRQATAEP-SYPWTNDMLSWQRTSFHFQPQENWMNDPNGPLFHMGWYHLFYQYNPDSAIWGNITWGHAISRDLINWLHLPFAMQPDQWYDINGVWTGSATVLPDGKIVMLYTGDTDDLVQVQNLAYPANLSDPL 243          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INVA_SOLLC (Acid beta-fructofuranosidase OS=Solanum lycopersicum GN=TIV1 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.499e-64
Identity = 110/149 (73.83%), Postives = 126/149 (84.56%), Query Frame = 2
Query:  371 PFTSASSAGVSEKSNRRF-GARTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPL 814
            P +   S GVS+K+ R   GA   SY W+N MLSWQRTA+HFQPQKNWMNDPNGP+++KGWYHLFYQYNP+ AIWG+I WGHAVSKDLIHW +LP AMV DQWYDI GVWTGSATILPDG++MMLYTG T++ VQVQNLAYPA+ SDPL
Sbjct:   68 PPSRGVSQGVSDKTFRDVAGASHVSYAWSNAMLSWQRTAYHFQPQKNWMNDPNGPLYHKGWYHLFYQYNPDSAIWGNITWGHAVSKDLIHWLYLPFAMVPDQWYDINGVWTGSATILPDGQIMMLYTGDTDDYVQVQNLAYPANLSDPL 216          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INV1_CAPAN (Acid beta-fructofuranosidase AIV-18 OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.601e-62
Identity = 111/162 (68.52%), Postives = 128/162 (79.01%), Query Frame = 2
Query:  338 SSSSKDPERLRPFTSAS--SAGVSEKSNRRF-GARTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPL 814
            + S    E L P T +   S GVSEK+ +   G    SY W+N ML+WQRTA+HFQPQKNWMNDPNGP+++KGWYHLFYQYNP+ AIWG+I WGHAVS DLIHW +LP AMV DQWYDI GVWTGSATILPDG +MMLYTG T++ VQVQNLAYPA+ SDPL
Sbjct:   63 NKSPSASETLTPATPSRGVSQGVSEKTFKDVSGTSQVSYTWSNAMLNWQRTAYHFQPQKNWMNDPNGPLYHKGWYHLFYQYNPDSAIWGNITWGHAVSTDLIHWLYLPFAMVPDQWYDINGVWTGSATILPDGLIMMLYTGDTDDYVQVQNLAYPANLSDPL 224          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INV1_MAIZE (Beta-fructofuranosidase 1 OS=Zea mays GN=IVR1 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.514e-56
Identity = 100/143 (69.93%), Postives = 115/143 (80.42%), Query Frame = 2
Query:  395 GVSEKSNRRFGARTA--SYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNE-SVQVQNLAYPADPSDPL 814
            GVSEKS        A   + WTN ML+WQRTAFHFQP KNWMNDPNGP+++KGWYHLFYQ+NP+ A+WG+I WGHAVS+DL+HW HLPLAMV D  YD  GVW+GSAT LPDG+++MLYTGST E S QVQNLA PAD SDPL
Sbjct:   96 GVSEKSTAPLLGSGALQDFSWTNAMLAWQRTAFHFQPPKNWMNDPNGPLYHKGWYHLFYQWNPDSAVWGNITWGHAVSRDLLHWLHLPLAMVPDHPYDANGVWSGSATRLPDGRIVMLYTGSTAESSAQVQNLAEPADASDPL 238          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: GFT_ASPOF (6(G)-fructosyltransferase OS=Asparagus officinalis GN=FT1 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.454e-52
Identity = 88/146 (60.27%), Postives = 111/146 (76.03%), Query Frame = 2
Query:  380 SASSAGVSEKSNRRFGARTASYPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILP-DGKLMMLYTGSTNESVQVQNLAYPADPSDPL 814
            S SS      S  R G+    Y WTN ML+WQR  FHF+  KN+MNDP+GP++YKGWYHLFYQ+NPN A WGDI WGHAVS+DL++W+HLP+A+  D+WYDI GVWTGS T++P DG+++MLYTG T E  Q+ ++A  ADPSDPL
Sbjct:   36 SFSSRKSESGSGLRSGSVEPEYAWTNQMLTWQRAGFHFRTVKNYMNDPSGPMYYKGWYHLFYQHNPNYAYWGDISWGHAVSRDLLNWFHLPVAVKPDRWYDIYGVWTGSITVMPDDGRVVMLYTGGTKEKYQIMSVAMAADPSDPL 181          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: GFT_ALLCE (Bifunctional 6(G)-fructosyltransferase/2,1-fructan:2,1-fructan 1-fructosyltransferase OS=Allium cepa PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.033e-45
Identity = 75/124 (60.48%), Postives = 98/124 (79.03%), Query Frame = 2
Query:  443 YPWTNNMLSWQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTGSTNESVQVQNLAYPADPSDPL 814
            +PWTN+ML+WQR  FHF+  +N+MNDP+GP++YKGWYHLFYQ+N + A WG+I WGHAVS+DLI+W HLP+A+  D WYDI GVWTGS  ++ + +++ML+TG T    Q  NLA  ADPSDPL
Sbjct:   60 FPWTNDMLAWQRCGFHFRTVRNYMNDPSGPMYYKGWYHLFYQHNKDFAYWGNITWGHAVSRDLINWQHLPVAVGPDHWYDISGVWTGSIIVVSEDRVVMLFTGGTKSFDQSINLAEAADPSDPL 183          
BLAST of CB290258 vs. ExPASy Swiss-Prot
Match: INV1_ORYSJ (Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Oryza sativa subsp. japonica GN=CIN1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.750e-38
Identity = 78/144 (54.17%), Postives = 98/144 (68.06%), Query Frame = 2
Query:  392 AGVSEKSNRRFGARTASYPWTNNMLS-WQRTAFHFQPQKNWMNDPNGPVFYKGWYHLFYQYNPNGAIWGDIVWGHAVSKDLIHWYHLPLAMVADQWYDIMGVWTGSATILPDGKLMMLYTG--STNESVQVQNLAYPADPSDPL 814
            AG S   +R   A  A      +++S   RT +HFQP  NW+NDPNGP++YKGWYHLFYQYNP GA+WG+IVW H+VS+DLI+W  L  A+  D   D  G W+GSATILPDG   +LYTG    N + QVQN+A+P + SDPL
Sbjct:   20 AGASHVVHRSLEAEQAPSSVPASIVSPLLRTGYHFQPPMNWINDPNGPLYYKGWYHLFYQYNPKGAVWGNIVWAHSVSQDLINWIALEPAIKPDIPSDQYGCWSGSATILPDGTPAILYTGIDRPNINYQVQNIAFPKNASDPL 163          
The following BLAST results are available for this feature:
BLAST of CB290258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
INVA_PHAAU2.086e-7071.78Acid beta-fructofuranosidase OS=Phaseolus aureus G... [more]
INVA_PHAVU1.035e-6978.08Acid beta-fructofuranosidase OS=Phaseolus vulgaris... [more]
INVA_VICFA2.306e-6973.49Acid beta-fructofuranosidase OS=Vicia faba GN=VCIN... [more]
INVB_DAUCA1.827e-6671.07Beta-fructofuranosidase, soluble isoenzyme I OS=Da... [more]
INVA_SOLLC6.499e-6473.83Acid beta-fructofuranosidase OS=Solanum lycopersic... [more]
INV1_CAPAN1.601e-6268.52Acid beta-fructofuranosidase AIV-18 OS=Capsicum an... [more]
INV1_MAIZE6.514e-5669.93Beta-fructofuranosidase 1 OS=Zea mays GN=IVR1 PE=3... [more]
GFT_ASPOF7.454e-5260.276(G)-fructosyltransferase OS=Asparagus officinalis... [more]
GFT_ALLCE3.033e-4560.48Bifunctional 6(G)-fructosyltransferase/2,1-fructan... [more]
INV1_ORYSJ2.750e-3854.17Beta-fructofuranosidase, insoluble isoenzyme 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290258 ID=CB290258; Name=CB290258; organism=Citrus sinensis; type=EST; length=815bp
GCCCGTGGTTTGTTGTATAAATAGACCCCCGGTTCTCTTAACCTTTCTCC
CCATTATTCATTGAAACCAACAAATTTATCAAGCAGCAGCCCTCTAGTGC
GCCGCATACATTCGTTAATCAATGGCAGATTCTAATGTATCCTACAATCC
TCTCCCGGACGGGGAACGTCCGCGGCCAACTCGCCGGAGATCCATCGTCT
TGGTTCTATCCGGTTTGTTGGTCGTTGGTTTTTTAGTTGCATTATTATCC
GATAATGGATCTATAGCCCCTACTAACGTTATTGATAATGACAATAATAA
TGTTAATGATAATGCACAAAATGGGCTTAATGATGTGTCGTCGTCGTCGA
AAGACCCCGAGAGACTCCGGCCGTTTACGAGTGCCTCGTCGGCCGGGGTG
TCTGAGAAGTCGAACCGGCGGTTTGGTGCAAGGACGGCGTCGTATCCCTG
GACCAATAATATGCTGTCGTGGCAAAGGACGGCCTTCCACTTTCAACCCC
AAAAGAATTGGATGAATGATCCTAATGGTCCAGTGTTTTACAAAGGATGG
TACCATTTGTTCTACCAGTACAACCCAAATGGCGCAATATGGGGTGACAT
AGTGTGGGGGCATGCTGTGTCAAAGGACCTGATCCATTGGTATCACCTCC
CGTTGGCCATGGTTGCCGATCAATGGTATGATATTATGGGTGTCTGGACC
GGCTCTGCTACAATCCTACCTGATGGAAAACTTATGATGTTGTACACTGG
ATCCACCAACGAGTCTGTGCAGGTCCAAAATCTCGCATATCCTGCCGACC
CATCTGATCCTCTAC
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