CB290259

Overview
NameCB290259
Unique NameCB290259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig261 contig Csv1_Contig261:490..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290259 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.491e-56
Identity = 105/134 (78.36%), Postives = 120/134 (89.55%), Query Frame = -1
Query:  481 VGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDQTQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 882
            +GRIAQ TKV AEGGYEKIFRQ+F+T PEEQLL ++ACYLSTSAGPV+GVLY+S+AKLA+CSD+PLSYK GDQT+WSYYKVVIPL QLKAVNPS S   PAEKYIQVISVDNHEFWFMGF++YD AV +L  +L
Sbjct:  158 MGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291          
BLAST of CB290259 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.823e-54
Identity = 100/134 (74.63%), Postives = 120/134 (89.55%), Query Frame = -1
Query:  481 VGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDQTQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 882
            V RIAQ TK+LAEGGYEK+F+Q+FD +P+E+LLKTYACYLSTSAGPV+GV+YLST KLAF SD+PLSYK G+QT WSYYKVV+P +QLKAVNPSTS+   ++KYIQVIS+DNHEFWFMGFV Y+SAVK+L  A+
Sbjct:  121 VSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAV 254          
BLAST of CB290259 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.810e-44
Identity = 93/142 (65.49%), Postives = 108/142 (76.06%), Query Frame = -1
Query:  457 VGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDQTQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGALGPRSL*CV 882
            +GRIAQ TKVLAEGGYEKIFRQ+F+TVPEEQL  ++ACYLSTSAGPV+GVLY+STAKLA+CSD  L              VVIPL QLK+VNPS S   PAEKYIQVISVD+HEFWFMGF++Y+ AV +L   L   +  CV
Sbjct:  111 MGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL--------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGFLNYEGAVTSLQDTLQAGASVCV 238          
BLAST of CB290259 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.988e-36
Identity = 69/131 (52.67%), Postives = 91/131 (69.47%), Query Frame = -1
Query:  490 GRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV-GDQTQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLL 879
            G++    K + +GG+E +FRQ F T P E L KT+ACYLST+ GPV G +YLS A++AFCSD PL +     Q  WSYY+VV+PL+ +  VNP   K  P EKYIQ+ +VD H+FWFMGFV+Y+ A  +LL
Sbjct:  127 GKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLL 257          
BLAST of CB290259 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.743e-26
Identity = 58/135 (42.96%), Postives = 88/135 (65.19%), Query Frame = -1
Query:  481 RIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDQ---TQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 876
            +++   K+L  GG EKI+++ F    +E+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV          +YKV IPL ++  VN S +  KP++KY++++++DN +FWFMGFV Y  A   L  AL
Sbjct:   81 KLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSE--RSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKAL 213          
BLAST of CB290259 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.743e-26
Identity = 56/136 (41.18%), Postives = 90/136 (66.18%), Query Frame = -1
Query:  481 VGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDP--LSYKVGDQTQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 882
            + R++Q TK++ EGG E++F++ F  +  E+LL ++ CY+ST++GPV GV+Y+S  ++AFCSD    L    G     +YYKVV+   ++ +++ ST+  KP+E+Y+ +++ D  EFWFMGFV Y  A   L  AL
Sbjct:   89 MARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCLNKAL 224          
BLAST of CB290259 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.982e-26
Identity = 58/135 (42.96%), Postives = 88/135 (65.19%), Query Frame = -1
Query:  481 RIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGD---QTQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 876
            +++   ++L  GG EKI+++ F    EE+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV     +    +YKV IPL ++  VN S +  KP++KY++V++VD  +FWFMGF+ Y  A   L  AL
Sbjct:   81 KLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSE--RSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQAL 213          
BLAST of CB290259 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.982e-26
Identity = 57/134 (42.54%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  481 RIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV--GDQTQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 876
            +++   K+L  GG EKI+++ F    +E+L K Y CYLST+ G + G+L++S+ K+AFCS+  +      GD T+  +YKV IPL ++  VN S +  KP+++Y++V++VDN++FWFMGFV Y  A   L  AL
Sbjct:   73 KLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTR-VHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKAL 205          
BLAST of CB290259 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.153e-24
Identity = 60/136 (44.12%), Postives = 88/136 (64.71%), Query Frame = -1
Query:  481 RIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDQTQWS----YYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 876
            +++   ++L  GG EKIF++ F     E+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV D  Q      +YKV IPL ++  VN S +  KP++KY++V++VD  +FWFMGF+ Y  A   L  AL
Sbjct:   80 KLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSE--RSIKV-DSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKAL 212          
The following BLAST results are available for this feature:
BLAST of CB290259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEM_ARATH1.491e-5678.36GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH1.823e-5474.63GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML3_ARATH3.810e-4465.49Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML5_ARATH4.988e-3652.67GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEML6_ARATH2.743e-2642.96GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML2_ARATH2.743e-2641.18GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
GEML8_ARATH7.982e-2642.96Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML7_ARATH7.982e-2642.54GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH1.153e-2444.12GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290259 ID=CB290259; Name=CB290259; organism=Citrus sinensis; type=EST; length=882bp
TTATTTTTTAACATTTCACCCGCAAAAGAAATAGCTGAAATCACATCATA
TATACAAGAAACTGCTAATTCTCACCAGGTACAAAGTTCAAGCCAACAAA
TCCCATCCAACATCAATAGGAATCACACGGTGACTTACAAATGAATGCAA
CATACATAATTTGTCTCAAATATTCAATAATTTACATATGATGGTTTGTC
TACCTAGTAATACTAGCCACCACAAAAACCTATCCTAAGAAATGCATCCC
GTAATGTGGCGTTATGATGTTGAGAACAAAATGTGATTTGAAAATTGTAC
AAAGTCACGATCCACTCCATGAATGCCATTTCACATGGCATCTCACTTGG
GATACACTTTTTGGGATAAATTTTGCAATGACAAGCATTATTGTTTATCT
ACATTAACAATTGGTGAATGAGACTCTCCATGACATGGTCAAATGATTTG
ACCTCAAACGCATCATAAGCTACGAGGCCCCAATGCTCCCAGAAGATTTT
TCACCGCACTATCATAATGCACAAAGCCCATGAACCAAAACTCATGGTTG
TCAACAGAGATGACCTGGATATATTTCTCAGCTGGCTTGGCTTTGCTTGT
TGAGGGATTGACTGCTTTCAGCTGACTCAATGGAATAACCACCTTATAAT
AGCTCCATTGCGTCTGATCACCTACTTTGTAAGACAGAGGGTCATCACTA
CAAAATGCAAGCTTTGCAGTCGACAAATATAAAACTCCCACTACGGGACC
GGCAGATGTAGATAGGTAGCATGCATAAGTCTTCAGGAGTTGTTCCTCAG
GAACAGTGTCAAAACTTTGTCGAAAGATCTTCTCGTATCCACCTTCAGCG
AGCACTTTTGTTCTCTGTGCAATTCTTCCCAC
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