CB290265

Overview
NameCB290265
Unique NameCB290265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290265_ssr49 microsatellite CB290265_ssr49:49..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2681 contig Csv1_Contig2681:29..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290265 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.571e-68
Identity = 146/245 (59.59%), Postives = 169/245 (68.98%), Query Frame = 1
Query:   28 MAATLPISSSSPLVSR-----EARTSIARRNVAPCSVTLPATS---RKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQG-----TQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 723
            MA      S+SPLVS       +RT+  +   AP SV  P +    RK A RL A   QA G+NKDTSVDVHV++ NQG     +  ERRPRR ALD+ PFGL+DP  P RTMRQM+DTMDRL EDTM FPG SR  G G++R PWDIK++ENEIKMRFDMPGL             LVIKGEH+ EE+G D SW G ++SSYDTRL LPDN +KDKVKAELKNGVL ISIPKT VE+KV DV+I
Sbjct:    1 MACKTLTCSASPLVSNGVVSATSRTNNKKTTTAPFSVCFPYSKCSVRKPASRLVA---QATGDNKDTSVDVHVSNNNQGGNNQGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSW-GRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEI 240          
BLAST of CB290265 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 9.503e-68
Identity = 140/232 (60.34%), Postives = 165/232 (71.12%), Query Frame = 1
Query:   52 SSSPLVSREARTSIARRN----VAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSG----NQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 723
            +SSPLVS  +    ++ N     APCSV +P+  R+   RL A   +A G+NKDTSVDVH +S     NQGT  ERRP R ALD+ PFG++DP  P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGL             LVIKGEH+ EE G D    G ++SSYDTRL LPDN  KDK+KAELKNGVL+ISIPKT VE+KVIDVQI
Sbjct:    7 TSSPLVSNVSVGGTSKINNNKVSAPCSVFVPSM-RRPTTRLVA---RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of CB290265 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.765e-65
Identity = 122/182 (67.03%), Postives = 147/182 (80.77%), Query Frame = 1
Query:  184 GGENKDTSVDV-HVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAE-EAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 723
            GG+NKD SV+V HV+ G+QGT  E++PRRTA+DI PFG++DP  P R+MRQ+LDTMDR+ EDTM FPGR+   GGG++R PWDIK+EE+EI+MRFDMPGL             LVIKG H++E E GGD SWS  ++SSYDTRL+LPDNCEKDKVKAELKNGVLYI+IPKT VERKVIDVQ+
Sbjct:    1 GGDNKDNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQV 180          
BLAST of CB290265 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.191e-64
Identity = 129/236 (54.66%), Postives = 172/236 (72.88%), Query Frame = 1
Query:   28 MAATLPISS-SSPLVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGE--NKDTSVDVH-VNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 723
            MA ++ +S+ +SP++S++  +S+  ++  PC  + P   +     L+ VRAQAGG+  NKD SV+VH VN  +QGT  ER+PRR+++DI PFGL+DP  P R+MRQMLDTMDR+ ED +  PGR+   GGG++R PW+IK+EE+EI+MRFDMPG+             LVIK +HR EE GG+  WS  S+S YDTRL+LPDNCEK+KVKAELK+GVLYI+IPKT +ER VIDVQI
Sbjct:    1 MAQSVSLSTIASPILSQKPGSSV--KSTPPCMASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHR-EENGGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQI 231          
BLAST of CB290265 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.293e-60
Identity = 129/234 (55.13%), Postives = 156/234 (66.67%), Query Frame = 1
Query:   28 MAATLPISSSSPLVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPR-RTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 723
            MA+TL  ++S+         S++ ++  P SV+ P   RK   R   +RAQ   EN    V      GNQG+  E+RP+ R  +D+ PFGL+DP  P RTMRQMLDTMDR+ EDTM   GR+R G G  ++R PWDIKEEE+EIKMRFDMPGL             LVIKGE + E++  D SWSG S SSY TRLQLPDNCEKDK+KAELKNGVL+I+IPKT VERKVIDVQI
Sbjct:    1 MASTLSFAASALCSPLAPSPSVSSKSATPFSVSFP---RKIPSR---IRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDS--DDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQI 226          
BLAST of CB290265 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.628e-51
Identity = 112/235 (47.66%), Postives = 135/235 (57.45%), Query Frame = 1
Query:   49 SSSSPLVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHV----NSGNQ-GTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEA-----GGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 723
            ++++P       +  AR  +       PA    G        A A  EN+D SVDV V    N+GNQ G   +RRPRR   DI PFGL+DP  P RTMRQMLDTMDRL +D + FP R       + R PWDI E+E E+KMRFDMPGL             LVI+GEH+ E       GGD  W   S SSYD RL LPD C+K +V+AELKNGVL +S+PK   ERKVIDVQ+
Sbjct:    3 AANAPFALVSRLSPAARLPIRAWRAARPAPLSTGGRTRPLSVASAAQENRDNSVDVQVSQAQNAGNQQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQV 237          
BLAST of CB290265 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.396e-49
Identity = 122/234 (52.14%), Postives = 147/234 (62.82%), Query Frame = 1
Query:   67 VSREARTSI--ARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKD-TSVDVHVNS--GNQ-GTQAERRPRRT-ALD-ILPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEA-----GGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 723
            VS  AR  I  A R   P +V LP++ R      Q   A A  EN+D T+VDVHVN   GNQ G   +RRPRR+ ALD I PFGL+DP  P RTMRQMLDTMDR+ +D  + FP   R     G+VR PWD+ E++ E++MRFDMPGL             LVI+GEH+ EE       GD  W   S SSYD RL LPD C+K KV+AELKNGVL +++PKT VERKVIDVQ+
Sbjct:   11 VSPAARLPIRAAWRRARP-TVGLPSSGRAR----QLAVASAAQENRDNTAVDVHVNQDGGNQQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQV 239          
BLAST of CB290265 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.158e-19
Identity = 77/220 (35.00%), Postives = 114/220 (51.82%), Query Frame = 1
Query:   52 SSSPLVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRA-QAGGENKDTSVDVHVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTNVERK 705
            +S+  + R   +SIA R+    SV  PA S +  +   AVR+    GEN D  VD++  S          PRR   D     + DP  PTR++ Q+L+ MD+ +E+ +     +R  G    R  WDIKE+++ + +R DMPGL             LVI+GE + EE GG+   SG     + +R+ LPD   K D++KAE+KNGVL + IPK   + +
Sbjct:    2 ASALALKRLLSSSIAPRSR---SVLRPAVSSR-LFNTNAVRSYDDDGENGD-GVDLYRRSV---------PRRRG-DFFS-DVFDPFSPTRSVSQVLNLMDQFMENPLL--SATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGN--RRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQER 201          
BLAST of CB290265 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.624e-17
Identity = 53/138 (38.41%), Postives = 80/138 (57.97%), Query Frame = 1
Query:  295 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTNVERK 705
            ++DP  PTR++ QML+ MD++ E  +     +R  G   VR  W++KE+++ + +R DMPGL             LVI+GE   EE G D S  G  F+S   R++LP+   K D++KAE+KNGVL + IPK   + +
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV--SATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEE-GEDVSGDGRRFTS---RIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDER 201          
BLAST of CB290265 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.442e-16
Identity = 68/200 (34.00%), Postives = 101/200 (50.50%), Query Frame = 1
Query:  133 ATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTNVERK--VIDVQI 723
            A+S   ++   A+R Q    + D +VDV+ +S          PR    D+L   + DP  P R++ Q+L+ +D LL D       SR G        WD +E E+ + +R DMPGL             L IKGE  A+E+  +   SG  FSS   R+ LP+   K D +KAE+KNGVL +++PK   E +  VI+V++
Sbjct:   25 ASSASRSFNTNAMR-QYDQHSDDRNVDVYRHSF---------PRTRRDDLLLSDVFDPFSPPRSLSQVLNMVD-LLTDNPVLSAASRRG--------WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKES-EEKEKSGRRFSS---RIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKV 201          
The following BLAST results are available for this feature:
BLAST of CB290265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS22C_PETHY5.571e-6859.59Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC9.503e-6860.34Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_SOYBN5.765e-6567.03Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_PEA2.191e-6454.66Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS25P_ARATH7.293e-6055.1325.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_WHEAT3.628e-5147.66Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ3.396e-4952.1426.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23M_ARATH8.158e-1935.0023.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH2.624e-1738.4123.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA8.442e-1634.00Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ad10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ad10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290265 ID=CB290265; Name=CB290265; organism=Citrus sinensis; type=EST; length=804bp
GTCCGTAAGAAAACAAAGTGAAAATAAATGGCTGCAACATTACCTATCTC
ATCATCATCACCCTTGGTATCGCGCGAGGCCAGGACCTCAATAGCTAGGA
GAAATGTGGCGCCCTGCTCGGTAACCTTACCGGCAACGTCAAGGAAAGGC
GCCTATCGGCTACAAGCCGTGAGAGCTCAGGCTGGTGGGGAGAACAAGGA
TACTTCGGTTGACGTCCATGTTAATTCCGGTAACCAAGGAACCCAAGCGG
AGAGGAGGCCTCGAAGAACGGCTCTCGATATTTTACCTTTCGGTTTGATG
GATCCCTCGTTTCCAACGAGGACAATGCGGCAGATGCTGGACACAATGGA
CCGTCTATTAGAGGATACGATGGCTTTTCCGGGGAGGAGCCGGGCTGGCG
GGGGAGGCCAGGTGAGAACACCGTGGGACATCAAAGAGGAGGAAAATGAG
ATCAAAATGAGATTTGACATGCCTGGACTCTCTAAGGAGGATGTCAAAGT
GTCGGTGGAAGATGATGTCCTTGTCATTAAAGGAGAGCACAGGGCAGAAG
AAGCTGGAGGTGATCCGAGTTGGTCTGGTGCAAGTTTTAGCTCTTACGAT
ACTCGTCTCCAGCTTCCTGATAACTGTGAGAAAGATAAGGTCAAGGCAGA
GCTCAAGAATGGTGTTCTTTACATTTCAATTCCTAAGACCAATGTGGAGC
GCAAGGTCATTGATGTTCAGATTCTGTAATTATAATGATGTGTGCCTAGC
GCAATGTGTATGTTAAGGTTTTGTGATCTACATGTCCAGCTTTTTAAGTG
CATA
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