CB290298

Overview
NameCB290298
Unique NameCB290298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:436..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290298 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.613e-30
Identity = 72/122 (59.02%), Postives = 80/122 (65.57%), Query Frame = 3
Query:    9 KQIRSTRTQYMPDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLK-PAQPQGDTFFHA--LECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 365
            KQIRSTRTQ+M D L +LQ KE LL EAN+ L+QR              MEGYQ+N+LQLN SAED GYG        GD  F    +ECEPTLQIGY   DP SVVTAGPS+NNYM GWLP
Sbjct:  140 KQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQR--------------MEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGGWLP 247          
BLAST of CB290298 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.273e-29
Identity = 72/119 (60.50%), Postives = 81/119 (68.07%), Query Frame = 3
Query:    9 KQIRSTRTQYMPDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 365
            KQIRSTRTQ M D L +LQ KE  L+EAN+TLKQR             LMEG  +N LQ   +A+D GYG +  Q QGD FFH LECEPTLQIGYQ  DPI+V  AGPS+NNYM GWLP
Sbjct:  138 KQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQR-------------LMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVNNYMAGWLP 241          
BLAST of CB290298 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 59/121 (48.76%), Postives = 74/121 (61.16%), Query Frame = 3
Query:    9 KQIRSTRTQYMPDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQL-NPS-AEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYM-QGWL 362
            +QIRSTRTQ+M D L +LQ +EQ+L EANKTLK+R               E  Q N  Q+ +PS     GYG +PAQ  G+ F+H LECEPTLQIGY     ++  TA  ++NNYM  GWL
Sbjct:  136 RQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRR-------------FEESSQANQQQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYHSDITMATATAS-TVNNYMPPGWL 242          
BLAST of CB290298 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 60/122 (49.18%), Postives = 74/122 (60.66%), Query Frame = 3
Query:    9 KQIRSTRTQYMPDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCG-YGLKPAQPQ--GDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 365
            KQIR+ RTQ+M D L +LQ KE++L+E NKTL+             L+L +GYQ+  LQLNP+ E+   YG    Q Q     FF  LECEP LQIGYQ       + AGPS+NNYM GWLP
Sbjct:  140 KQIRALRTQFMLDQLNDLQSKERMLTETNKTLR-------------LRLADGYQM-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ--DGMGAGPSVNNYMLGWLP 245          
BLAST of CB290298 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.800e-19
Identity = 60/124 (48.39%), Postives = 75/124 (60.48%), Query Frame = 3
Query:    9 KQIRSTRTQYMPDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAED--CGYGLKPAQPQGDT---FFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 365
            KQIR+ RTQ+M D L +LQ KE++L+E NKTL+             L+L +GYQ+  LQLNP+ ED    YG    Q Q ++   FF  LECEP LQ+GYQ       + AGPS NNYM GWLP
Sbjct:  140 KQIRALRTQFMLDQLNDLQSKERMLNETNKTLR-------------LRLADGYQM-PLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHG-MEAGPSENNYMLGWLP 248          
BLAST of CB290298 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 3
Query:    9 KQIRSTRTQYMPDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLME-GYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 365
            K +R+TRT+++ D LTELQ KEQ++SEAN+ L+++     H    G Q+ E G  +   +  P  +   +G       G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  139 KHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV--RGQQVWEQGCNLIGYERQPEVQQPLHG-------GNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of CB290298 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 3
Query:    9 KQIRSTRTQYMPDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLME-GYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 365
            K +R+TRT+++ D LTELQ KEQ++SEAN+ L+++     H    G Q+ E G  +   +  P  +   +G       G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  139 KHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV--RGQQVWEQGCNLIGYERQPEVQQPLHG-------GNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
The following BLAST results are available for this feature:
BLAST of CB290298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MTF1_PEA8.613e-3059.02MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL9_PETHY3.273e-2960.50Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
AGL9_ARADE6.187e-2048.76Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
SEP3_ARATH1.055e-1949.18Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_SINAL1.800e-1948.39Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
MADS7_ORYSJ6.201e-1238.52MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI6.201e-1238.52MADS-box transcription factor 7 OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01af06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01af06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290298 ID=CB290298; Name=CB290298; organism=Citrus sinensis; type=EST; length=629bp
GCCCGTGGAAGCAGATCAGATCAACAAGAACTCAGTACATGCCGGATACC
CTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGAC
CCTCAAACAAAGGACGATGACGCTAAGGCACGCCGATTTTGCTGGTTTGC
AGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAATCCTAGTGCA
GAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGGGCGATACCTT
CTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGATACCAGCCTG
CGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTCTGAATAATTACATG
CAAGGATGGCTACCATGCTAAGAGAGCGGCGGGCATTACCAGTCAATGTA
TTGCAGTTGATCCATAAGAATCAGCAACTTTGTATCCCTTTGTAAGCAAC
CCTATTCAGTGACTAGGAACACGCAATCATAAGGATTTATTATAATAACT
CTACAGTGATCCTGCACTTTAGGGAAACTGATGACGATATATAGCTATGT
TGTGTGTGCGTGTATTTTCAATCACCGCGCTTATCTTTATTTAACAAAGC
CTTGTTTGAGAATAAAAAAAAAAAAAAAA
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