CB290299

Overview
NameCB290299
Unique NameCB290299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5271 contig Csv1_Contig5271:262..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290299 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.165e-36
Identity = 77/96 (80.21%), Postives = 79/96 (82.29%), Query Frame = -1
Query:   92 MARFFFKGKVFFAPVGDGISLSIGRRGYAAAAPLGTIFWAGIMEKNDLTPAVREDFGAFFAWAPDPIPGFYRPENRAVEIDPAEL*EMLLNPKVRA 379
            MAR  FK K+  APV DGISLSI RRGYAAAAPLGTI   GIMEKNDL PAVRED GA  AWAPDPI G+YRPENRAVEIDPAEL EMLLN KVRA
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 96          
BLAST of CB290299 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 45/104 (43.27%), Postives = 59/104 (56.73%), Query Frame = -1
Query:   92 MARFFFKGKVFFAPVGDGISLSIGRRGYAAAAPLG---TIFWAGIMEKNDLTPAVREDFGA-----FFAWAPDPIPGFYRPENRAVEIDPAEL*EMLLNPKVRA 379
            MAR     K+  A + DG+ +SI RRGY+ A P     +    G M K +   A++E   +       AWAPDP+ G+YRPEN   EID AEL EMLLN +VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of CB290299 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.685e-11
Identity = 43/104 (41.35%), Postives = 57/104 (54.81%), Query Frame = -1
Query:   92 MARFFFKGKVFFAPVGDGISLSIGRRGYAAAAPLG---TIFWAGIMEKNDLTPAVREDFGA-----FFAWAPDPIPGFYRPENRAVEIDPAEL*EMLLNPKVRA 379
            MAR     K   A V D + +SI RRGY+ A P     +    G M K +   A++E   +       AWAPDP+ G+YRPEN   EID A+L EM+LN +VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of CB290299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI9.165e-3680.21Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI6.391e-1343.27Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI2.685e-1141.35Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01af07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01af07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290299 ID=CB290299; Name=CB290299; organism=Citrus sinensis; type=EST; length=520bp
AGTCAAAATTGCTACGGGAACAACATCACTTAAAAGTTAAAGCCCCCCTA
ACAGCAAAGGATCTGCTGCTATGCCCGACCACTCCCTAGGGGGCCCTGAC
TTTGGGGTTCAACAGCATCTCTCAAAGCTCTGCTGGATCAATCTCAACCG
CCCGATTCTCCGGCCTGTAAAACCCAGGGATGGGATCTGGGGCCCAGGCA
AAAAAGGCCCCAAAATCCTCTCTCACCGCAGGGGTCAAATCATTTTTCTC
CATGATACCAGCCCAAAATATGGTTCCCAAGGGGGCTGCTGCAGCATATC
CTCTCCTGCCAATGGAAAGCGAAATGCCATCACCAACAGGAGCAAAAAAA
ACCTTACCTTTGAAAAAAAAGCGGGCCATTGTTTTATTTACTTATAAAAC
TTAATAAATATGAAAATAGCTAGCTGGGATGTTTCTGTACAGGGCTACTA
CAAAAAAAAAAAAATTCTGCTCCTGCAGTAGCTATAGGCAAAAGCTAGCG
GCTCGCTCTCTCCTCGGGCC
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