CB290315

Overview
NameCB290315
Unique NameCB290315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8219 contig Csv1_Contig8219:33..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB290315 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.061e-28
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 3 
Query:  108 MLGVFSSAIVSPPEELVA--AGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 548
            ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CB290315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.061e-2843.62Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ag04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ag04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290315 ID=CB290315; Name=CB290315; organism=Citrus sinensis; type=EST; length=776bp
GCCCGTGGGTTAAAGCCAAAGAGTTCCGAACGGATCAAAGTTCTCTTGTA
GGAGAGAGAAATTTCTAGGGCGAGAAAGCGAGAGAAAAGGAAATTTGGTA
GCTTAAAATGTTGGGAGTGTTCAGCAGCGCGATCGTTTCACCTCCAGAGG
AGCTGGTGGCGGCCGGAAGCCGGACTCCGTCGCCGAAGACCACATCGACG
GCACTGGTCGACCGTTTCCTCCAGACCAACTCGTCTGCTGTGTCCGTACA
GGTCGGGGACAACGTCACCCTCGCGTACACTCATCAGAACGAGTCTCCTT
TACGGCAAAGATCATTTGCTGTGAAAGATGAGATCTTTTGCTTGTTTGAG
GGAGCACTTGATAACTTGGGAAGCCTGAGGCAGCAATATGGACTAGCTAA
GTCGGCAAATGAAGTGATCTTGGTGATTGAGGCATACAAGGCTCTGCGTG
ATCGGGCCCCTTACCCACCGAACCATGTCGTTGGCCACCTTAGTGGGTAC
TTTGCCTTCATTGTCTACGACAAGTCCACCTCCACCTTGTTTGTGGCTTC
TGACCAATTTGGTAAGGTTCCTCTTTATTGGGGAATCACTGCTGATGGAC
ATGTTGCCTTTGCTGATGATGCTGACTTGCTCAAAGGTGCTTGCGGCAAG
TCACTTGCTTCTTTCCCTCAAGGTTGTTTCTTCTCAACAGCAGTTGGAGG
ACTGAGAAGCTTTGAGAATCCAAAGAACAAGATCACTGCGGTTCCTGCTG
CGGAAGAAGAGATCTGGGGTGCTACA
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