CB290318

Overview
NameCB290318
Unique NameCB290318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4378 contig Csv1_Contig4378:312..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290318 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.965e-17
Identity = 39/55 (70.91%), Postives = 50/55 (90.91%), Query Frame = -3
Query:  388 DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNSNRSQAEG 552
            +HP+NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+  N+ QAEG
Sbjct:   65 EHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119          
BLAST of CB290318 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.377e-14
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = -3
Query:  388 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNSNRSQAEG 549
            HP NKSVA VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++  N+ QA G
Sbjct:   58 HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG 111          
BLAST of CB290318 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = -3
Query:  394 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNSNRSQA 549
            +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K +   N+ ++
Sbjct:   63 NPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGES 114          
BLAST of CB290318 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = -3
Query:  394 HPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNSNRSQA 549
            +PKNKSVAAVGKA GE+WKS+SE++KAPYVAKA K K EY K +   N+ ++
Sbjct:   64 NPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGES 115          
BLAST of CB290318 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.431e-11
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = -3
Query:  403 DHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNSNR 552
            DHP NKSVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE  ++  N+
Sbjct:   66 DHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNK 115          
The following BLAST results are available for this feature:
BLAST of CB290318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_SOYBN2.965e-1770.91HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI1.377e-1462.96HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
MNB1B_MAIZE9.871e-1363.46DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT3.751e-1263.46HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGL_VICFA2.431e-1164.00HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ag06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ag06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290318 ID=CB290318; Name=CB290318; organism=Citrus sinensis; type=EST; length=560bp
AAAAGACATGGGTATTTTTCTACAAACGATGGAACGCCTTAGCTAAATCA
TTAAGCTTTAGAACACAGTACATATAGAGCAGTGAATCTCCCACCTACAG
CTATTAATTCTTCGAAAGGGAGGCATAAGAAAATGTCGAGGGAGAAGCAA
CATGATTCTCTTACATGATGATGAAGATGATGAAAGCATCCAAAAAAATT
AACATGGAAGCACAAAGCATTAACATATGTTGTTTGAAACATTGTCACAG
CCTAACATGACTATGCTAATTTCTTCCTTCAACTTCTATTCATCATCATC
CTCCTCGCCACTGCCTTCTTCATCATCATCCTCATCATTCACCTCTGACA
TAGACTTCTCAGACTCCTCTTCTTCCTCCGGGTTAGTTCCCTCCGCCTGG
CTCCTATTGGAGTTTTTCATATCCTTCTCATACTCAACCTTGCGCTTCTC
TGCCTTAGCAACATACGGGGCTTTATCAGCTTCAGACATTGACTTCCATT
TCTCACCACCAGCTTTACCAACAGCAGCAACTGATTTGTTCTTAGGATGA
TCCCCTCGGG
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