CB290326

Overview
NameCB290326
Unique NameCB290326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3006 contig Csv1_Contig3006:496..1240. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290326 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.027e-54
Identity = 105/117 (89.74%), Postives = 113/117 (96.58%), Query Frame = -1
Query:  395 FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCSA 745
            FENVERWLKELRDHTD NIVIMLVGNKADLRHLRAVSTEDA++FAE+ENTFFMETSALESLNVENAFTEVLT+IY+VV RKAL+VGDDPAALPKGQTIN+G KDDVSAVKK GCCS+
Sbjct:  102 FENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAALPKGQTINVG-KDDVSAVKKVGCCSS 217          
BLAST of CB290326 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.994e-41
Identity = 84/117 (71.79%), Postives = 101/117 (86.32%), Query Frame = -1
Query:  398 FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 745
            FENVERWLKELRDHTD NIV+MLVGNK+DLRHL AV T++ ++FAE+E+ +FMETSALES NVENAF EVLTQIYR+VS+++++ GDD  + P KG+ INI  KDDVSAVKK GCCS
Sbjct:  102 FENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGSGPGKGEKINI--KDDVSAVKKGGCCS 216          
BLAST of CB290326 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.779e-39
Identity = 81/120 (67.50%), Postives = 100/120 (83.33%), Query Frame = -1
Query:  395 FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPA---ALPKGQTINIGTKDDVSAVKKTGCCSA 745
            +ENV RWLKELRDHTD NIV+ML+GNK+DLRHL AVST++A+  AE+E  +FMETSALE+ NVENAFTE LTQIYR+VS+KA++ GD+ A   A PKG+TINI  KD+ S+ KK GCCS+
Sbjct:  101 YENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINI--KDEGSSWKKFGCCSS 218          
BLAST of CB290326 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.242e-39
Identity = 81/119 (68.07%), Postives = 99/119 (83.19%), Query Frame = -1
Query:  398 FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGD--DPAALP-KGQTINIGTKDDVSAVKKTGCCS 745
            FEN  RWLKELRDHTD NIV+ML+GNK+DLRHL AV TED +SFAE+E+ +FMETSALE+ NVENAFTEVLTQIYR+VS++A++ GD    + LP KGQTIN+  K+D S +K+ GCCS
Sbjct:  101 FENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINV--KEDSSVLKRFGCCS 217          
BLAST of CB290326 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.391e-38
Identity = 82/117 (70.09%), Postives = 97/117 (82.91%), Query Frame = -1
Query:  398 FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 745
            FENVE WLKELR+HTD NIV+MLVGNK+DLRHL AV TEDA+SFAEKE+ +FMETSALE+ NVENAF EVLTQI+ +VS+KA++   + A +P KG  I+IG   DVSAVKK GCCS
Sbjct:  101 FENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIG--KDVSAVKKGGCCS 215          
BLAST of CB290326 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.177e-37
Identity = 77/117 (65.81%), Postives = 99/117 (84.62%), Query Frame = -1
Query:  398 FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD-PAALPKGQTINIGTKDDVSAVKKTGCCS 745
            FENV+RWLKEL++HTD NIV+MLVGNK+DLRHL AV TED +S+AE+E+  FMETSALE+ NVE+AF EVLTQIYR+ S+K ++ G+D  A++PKG+ I +  K+DVSA+KK GCCS
Sbjct:  101 FENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASVPKGEKIEV--KNDVSALKKLGCCS 215          
BLAST of CB290326 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.302e-36
Identity = 74/117 (63.25%), Postives = 98/117 (83.76%), Query Frame = -1
Query:  398 FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 745
            FEN  RWL+ELR HTD NIV+ML+GNK DLRHL AV TE+A++FAE+E+ +FMETSAL++ NVENAFTEVLTQI+++VS++++D G + A LP KG+TIN+  K+D S +K+ GCCS
Sbjct:  101 FENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINV--KEDGSVLKRMGCCS 215          
BLAST of CB290326 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.439e-35
Identity = 74/119 (62.18%), Postives = 94/119 (78.99%), Query Frame = -1
Query:  398 FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAAL---PKGQTINIGTKDDVSAVKKTGCCS 745
            FE   RWLKELRDHTD NIV+ML+GNK+DLRHL  VSTED ++FAEKE+ +FMETSALE+ NVENAF+EVLTQIYR+VS++A++ GD P+      +GQTIN+   +D S + +  CCS
Sbjct:  101 FETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINV--NEDSSVLNRYRCCS 217          
BLAST of CB290326 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.140e-32
Identity = 70/119 (58.82%), Postives = 92/119 (77.31%), Query Frame = -1
Query:  395 FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKAL--DVGDDPAALPKGQTINIGTKDDVSAVKKTGCCSA 745
            FENV RWLKELRDH DSNIVIML+GNK DL+HLRAV+TEDAQS+AEKE   F+ETSALE+LNVE AF  +L+++YR++S+K++  D     A + +GQTI++    + +A  K  CCS+
Sbjct:  100 FENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKEGQTIDVAATSESNA--KKPCCSS 216          
BLAST of CB290326 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.489e-32
Identity = 72/117 (61.54%), Postives = 86/117 (73.50%), Query Frame = -1
Query:  398 FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQ-TINIGTKDDVSAVKKTGCCS 745
            FENVERWLKELRDH DSNIVIMLVGNK+DL+HLR V TE AQ+F E+E   F+ETSALES NVE AF ++LT+IY +VS+K LD  D+   + +G+  I I    D    KK GCCS
Sbjct:  100 FENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIGEGRDVIVIDNAHDDGGKKKGGCCS 216          
The following BLAST results are available for this feature:
BLAST of CB290326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RB11B_TOBAC4.027e-5489.74Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RIC2_ORYSJ2.994e-4171.79Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
YPT3_NICPL4.779e-3967.50Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11D_LOTJA6.242e-3968.07Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1C_ARATH1.391e-3870.09Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RAA1B_ARATH1.177e-3765.81Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RAA1A_ARATH1.302e-3663.25Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11E_LOTJA1.439e-3562.18Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAA2A_ARATH1.140e-3258.82Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE1.489e-3261.54Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ag10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ag10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290326 ID=CB290326; Name=CB290326; organism=Citrus sinensis; type=EST; length=745bp
ATCCAGTTTAAGAACAGAATTATCTTAACGAACTTCCCAAATTCCAGTCC
TCAGAAACCAAATATAAACTATCCTAGAGCTTAGGAGCTGATAACATACT
ACAATATGTTTTGGAGACAAACAGAGACAATACAATAAGAGAAAAACAGT
AGGCTCTTGCACAAACATGAGATCTCAGATCCAAATGATTATGGCTTTAA
CCTAACTCAAGCAAGATTTTGAGATTACCGGTACATGATGAAATGTAAAA
CTATAATTTCTTCCCGCACTCCATGTTGTCTCGTCCTAGCAAGCAGATCA
AAGCCAAGATGTCTCCAAGCCATGGAAATGTAAGTTCTAGAAAGAGGAGA
AACTATTTTTTACCACCTGGATTTTCCTTCGAAGCTGCAGATTATGCAGA
GCAGCATCCAGTCTTTTTCACAGCCGATACATCATCTTTAGTACCAATAT
TAATAGTTTGACCCTTGGGCAAGGCTGCTGGGTCATCACCTACATCAAGA
GCCTTCCTGCTAACAACTCGATATATCTGAGTGAGCACTTCGGTGAAGGC
ATTTTCAACATTCAACGACTCTAGGGCAGAGGTTTCCATGAAGAAAGTGT
TCTCTTTCTCAGCGAACGACTGAGCATCCTCAGTTGAAACAGCACGCAAG
TGACGCAAATCAGCCTTGTTACCCACAAGCATTATCACAATGTTTGAGTC
TGTGTGATCCCGAAGCTCTTTCAACCATCTCTCAACATTCTCAAA
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