CB290338

Overview
NameCB290338
Unique NameCB290338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6287 contig Csv1_Contig6287:982..1846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290338 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 1.164e-82
Identity = 145/222 (65.32%), Postives = 177/222 (79.73%), Query Frame = -3
Query:  207 IVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDS---AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 863
            I DSGTSLLAGPTPV+T INHAIG +GVVS +CK VV+QYG  I DLL+S   P+K+C QI LC F+G   VS GI++VV++    + DS    +CS CEM VVW+QNQL+Q QTKE++++YINELCD +P+PMG+S +DC ++ +MP VSFTIG KIF+L+PE+YILK GEG    CISGF AFD+PPPRGPLWILGDVFMG YHTVFD GKLR+G AEAA
Sbjct:  292 IADSGTSLLAGPTPVITMINHAIGAKGVVSQQCKAVVAQYGQTIMDLLLSEADPKKICSQINLCTFDGTRGVSMGIESVVDENAGKSSDSLHDGMCSVCEMTVVWMQNQLRQNQTKERIINYINELCDRMPSPMGQSAVDCGQLSSMPTVSFTIGGKIFDLAPEEYILKVGEGPVAQCISGFTAFDIPPPRGPLWILGDVFMGRYHTVFDFGKLRVGSAEAA 513          
BLAST of CB290338 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 2.427e-80
Identity = 138/219 (63.01%), Postives = 178/219 (81.28%), Query Frame = -3
Query:  207 IVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 863
            IVDSGTSLLAGPT +V ++NHAIG EG++S ECK VVS+YG++I +LL++   P+KVC Q+GLC F+G   VS GI++VV+KEN+  G  A+CS CEMAVVW++NQL++ +TKE +L+Y N+LC+ LP+P GES + C +I  MPN++FTI +K F L+PEQYI+K  +G   VCISGFMAFD+PPPRGPLWILGDVFMG YHTVFD GK RIGFA++A
Sbjct:  280 IVDSGTSLLAGPTAIVAQVNHAIGAEGIISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLCMFDGKRSVSNGIESVVDKENL--GSDAMCSVCEMAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSA 496          
BLAST of CB290338 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 5.978e-79
Identity = 142/225 (63.11%), Postives = 172/225 (76.44%), Query Frame = -3
Query:  207 IVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGDS------AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 863
            I DSGTSLLAGPT ++TEIN  IG  GVVS ECK VVSQYG  I DLL++   P K+C Q+GLC F+G   VS GIK+VV+ E   AG+S       +C+ACEMAVVW+QNQL Q +T++ +L+YIN+LCD LP+PMGES +DC  + +MP +SFTIG K F L PE+YILK GEG A  CISGF A D+PPPRGPLWILGDVFMG YHTVFD GK+R+GFA++A
Sbjct:  288 IADSGTSLLAGPTAIITEINEKIGATGVVSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLCTFDGKHGVSAGIKSVVDDE---AGESNGLQSGPMCNACEMAVVWMQNQLAQNKTQDLILNYINQLCDKLPSPMGESSVDCGSLASMPEISFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGAYHTVFDYGKMRVGFAKSA 509          
BLAST of CB290338 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.332e-78
Identity = 139/222 (62.61%), Postives = 170/222 (76.58%), Query Frame = -3
Query:  207 IVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEKENVSAGD---SAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 863
            I DSGTSLLAGPT ++TEIN  IG  GVVS ECK +VSQYG  I DLL++   P+K+C Q+GLC F+G   VS GI++VV+ E V +       +CSACEMAVVW+QNQL Q +T++ +L Y+N+LC+ LP+PMGES +DC  + +MP++ FTIG K F L PE+YILK GEG A  CISGF A D+PPPRGPLWILGDVFMG YHTVFD GKLRIGFA+AA
Sbjct:  287 IADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 508          
BLAST of CB290338 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.974e-70
Identity = 124/220 (56.36%), Postives = 165/220 (75.00%), Query Frame = -3
Query:  207 IVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEYVSTGIKTVVEK-ENVSAGDSAVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 863
            I DSGTSLLAG T +VT+IN AIG  GV+S +CK +V QYG  + ++L+S   PEK+C Q+ LC+F+G+   S  I++VV+K +  S+G    C  C   VVW+QNQ++Q +T+E +++Y+++LC+ LP+PMGES +DC  + +MPN++FT+G K FNLSPEQY+LK GEG    CISGF A D+ PP GPLWILGDVFMG YHTVFD G LR+GFAEAA
Sbjct:  254 IADSGTSLLAGTTTIVTQINQAIGAAGVMSQQCKSLVDQYGKSMIEMLLSEEQPEKICSQMKLCSFDGSHDTSMIIESVVDKSKGKSSGLPMRCVPCARWVVWMQNQIRQNETEENIINYVDKLCERLPSPMGESAVDCSSLSSMPNIAFTVGGKTFNLSPEQYVLKVGEGATAQCISGFTAMDVAPPHGPLWILGDVFMGQYHTVFDYGNLRVGFAEAA 473          
BLAST of CB290338 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.491e-25
Identity = 47/93 (50.54%), Postives = 69/93 (74.19%), Query Frame = -3
Query:  210 SLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 488
            ++P   GE +IDC ++PT+P +SF +G K ++L+ EQY+LK  +G   +C+SG M  ++PPP GPLWILGDVF+G Y+TVFD    R+GFA++
Sbjct:  303 AIPLIQGEYMIDCKKVPTLPTISFNVGGKTYSLTGEQYVLKESQGGKTICLSGLMGLEIPPPAGPLWILGDVFIGQYYTVFDRESNRVGFAKS 395          
BLAST of CB290338 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.467e-24
Identity = 56/141 (39.72%), Postives = 88/141 (62.41%), Query Frame = -3
Query:  210 VEKENVSAGDS-AVCSA-CEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 626
            +  ++++ GD  ++C+  CE  V    + +     + K L    +   + P   GE +++CD +P++P +SFT+G +++ L+ EQYILK  +    +C+SGFM  D+P P GPLWILGDVFMG Y+TVFD    R+GFA+A
Sbjct:  258 IRVDSMAVGDQLSLCTGGCEAIVDSGTSLITGPSVEVKALQ---KAIGAFPLIQGEYMVNCDTVPSLPVISFTVGGQVYTLTGEQYILKVTQAGKTMCLSGFMGLDIPAPAGPLWILGDVFMGQYYTVFDRDANRVGFAKA 395          
BLAST of CB290338 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.208e-24
Identity = 57/137 (41.61%), Postives = 80/137 (58.39%), Query Frame = -3
Query:  210 ENVSAGDSAVCS-ACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 617
            ++V  GD+  C+  CE A+      L      E  ++ IN+     P   GE ++DC  IP +P +SF +G K F+L    Y+L+  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+T FD G  R+GFA A
Sbjct:  253 DSVKVGDTEFCNNGCE-AIADTGTSLIAGPVSE--VTAINKAIGGTPIMNGEYMVDCSLIPKLPKISFVLGGKSFDLEGADYVLRVAQMGKTICLSGFMGIDIPPPNGPLWILGDVFIGKYYTEFDMGNDRVGFATA 386          
BLAST of CB290338 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.224e-23
Identity = 57/141 (40.43%), Postives = 84/141 (59.57%), Query Frame = -3
Query:  207 VEKENVSAGDS-AVCSACEMAVVWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 626
            +    V+ G S  +C     A+V     L   Q +E  +  + +   ++P   GE +I C+++P++P+V+ T+G K + LS E Y LK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+G AEAA
Sbjct:  207 IHMNQVAVGSSLTLCKGGCEAIVDTGTSLIVGQPEE--VRELGKAIGAVPLIQGEYMIPCEKVPSLPDVTVTLGGKKYKLSSENYTLKVSQAGQTICLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDLNRVGLAEAA 345          
BLAST of CB290338 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.088e-23
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = -3
Query:  207 SLPNPMGESIIDCDRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 488
            ++P   GE +I C+++ T+P ++  +G K + LSPE Y LK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFAEAA
Sbjct:  317 AVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 410          
The following BLAST results are available for this feature:
BLAST of CB290338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
ASPR_CUCPE1.164e-8265.32Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPRX_ORYSJ2.427e-8063.01Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
ASPR1_ORYSJ5.978e-7963.11Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
ASPR_HORVU1.332e-7862.61Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
CYPR1_CYNCA2.974e-7056.36Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
CATD_CLUHA6.491e-2550.54Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATD_CHIHA2.467e-2439.72Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
ASPP_AEDAE4.208e-2441.61Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
CATD_PIG1.224e-2340.43Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]
CATD_HUMAN2.088e-2351.06Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290338 ID=CB290338; Name=CB290338; organism=Citrus sinensis; type=EST; length=865bp
TTTTTTTTTTTTTTTTTGATAGGATTTTACATAAGTATATATCAGCATAT
CATCTGTGGTGATGATGAAGATAGTTATGCATAAAAGCATACTGATCGTT
TTACAGTACATGAAAACCATAATCTACATTCTAGAACCCTCCTCCTCATA
TGAGCAGGTGATGATCGCTGCTACTACATAAAAACTTGACAGTAAGTAGA
TCATTACGCAGCCTCAGCAAAGCCGATCCGGAGCTTACCAGAGTCGAAAA
CAGTGTGATAAACCCCCATGAATACATCTCCCAGAATCCACAGAGGACCC
CTTGGAGGAGGCAGGTCGAAAGCCATGAAGCCACTGATGCAGACTTCTGC
AATCCCTTCTCCGGTTTTCAGAATATACTGCTCTGGAGAGAGGTTGAAAA
TTTTGTCTCCGATGGTGAATGAAACATTTGGCATGGTTGGAATGCGATCA
CAGTCAATAATTGATTCGCCCATCGGATTTGGCAGGCTGTCGCAGAGCTC
ATTTATATAACTGAGTACTTTCTCCTTTGTTTGCTTTTGTTTTAGCTGAT
TCTGGACCCAAACCACGGCCATTTCACAAGCACTGCACACTGCACTATCC
CCGGCTGATACGTTTTCCTTCTCAACCACGGTCTTGATCCCAGTACTCAC
ATATTCAGCGCCATTGAAAGCACATAAACCAATCTGCTGACATACTTTCT
CAGGTAGTAGCCCTGATACTAAAAGATCCCATATTAAATCCCCGTACTGG
GAAACAACTAGCTTACACTCTGCACTAACAACTCCTTCACCACCAATGGC
ATGATTGATTTCAGTCACAACAGGTGTTGGACCGGCTAGTAAGGATGTTC
CTGAATCCACAATGG
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