CB290345

Overview
NameCB290345
Unique NameCB290345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB290345 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 6.320e-46
Identity = 113/221 (51.13%), Postives = 132/221 (59.73%), Query Frame = 3 
Query:   39 DTYDILSKLPKSDLRNLCTLLGHEGLSDKVYMLAGEVLKKLASVAALHRKFFASELSQLAHSLSISAVNELVTLRDTHXXXXXXXXXXXXXILRVLQALSSLTSASIXXXXXXXXXXXXXXXATMWNLNLALEPLWQELSDCITMTETQLGQSSFCPSVSNMNVGEXXXXXXXXXXXXXXXQRLLPFIEAFFVLCEKLQANHIMIQQDHADVTATEVKESA 701
            + Y+I  +LP+SDL NLC LLG+EGLSDK+Y LAGEVLKKLA+V   HRKFF  ELS+LA SLS S V EL TL                 ILRVLQ LSSLTS                    M  LN+ALEPLW ELS CI+MTE QL  ++   + SN+N G+               QRLLP IEAFFVLCEK+Q    M+QQD  +VTA EVKES+
Sbjct: 3021 EIYNIFLQLPQSDLCNLCILLGYEGLSDKIYSLAGEVLKKLAAVDVAHRKFFTKELSELASSLSSSTVRELATLSSKQKMSRSTGSMAGASILRVLQVLSSLTSPIDESNVGTERETEQEEQNIMQRLNVALEPLWHELSQCISMTELQLDHTA---AASNINPGDHVLGISPTSSLSPGTQRLLPLIEAFFVLCEKIQTPS-MLQQD-TNVTAGEVKESS 3236
[Close]
BLAST of CB290345 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.655e-44
Identity = 111/221 (50.23%), Postives = 129/221 (58.37%), Query Frame = 3 
Query:   39 DTYDILSKLPKSDLRNLCTLLGHEGLSDKVYMLAGEVLKKLASVAALHRKFFASELSQLAHSLSISAVNELVTLRDTHXXXXXXXXXXXXXILRVLQALSSLTSASIXXXXXXXXXXXXXXXATMWNLNLALEPLWQELSDCITMTETQLGQSSFCPSVSNMNVGEXXXXXXXXXXXXXXXQRLLPFIEAFFVLCEKLQANHIMIQQDHADVTATEVKESA 701
            + Y+I  +LP+SDL NLC LLG+EGLSDK+Y LAGEVLKKLA+V   HRKFF  ELS+LA  LS S V  L TL  T              ILRVLQ LSSLTS                    M  L +ALEPLWQEL  CI+MTE QL  ++   + SN+N G+               Q LLP IEAFFVLCEK+Q    M+QQD A VTA EVKES+
Sbjct: 2998 ELYNIFLQLPQSDLCNLCMLLGYEGLSDKIYSLAGEVLKKLAAVDVTHRKFFTKELSELASGLSSSTVRVLATLSTTQKMSQNTCSMAGASILRVLQVLSSLTSTIDDSNVGTDKETDQEEQNIMQGLKVALEPLWQELGQCISMTELQLDHTA---ATSNVNPGDHVLGISPTSSLSPGTQSLLPLIEAFFVLCEKIQTPS-MLQQD-ATVTAGEVKESS 3213
The following BLAST results are available for this feature:
BLAST of CB290345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UPL1_ARATH6.320e-4651.13E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
UPL2_ARATH2.655e-4450.23E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290345 ID=CB290345; Name=CB290345; organism=Citrus sinensis; type=EST; length=713bp
GTATNAAGAAATCTTCTTCGTCTTTAAAGAGAAGCATTGACACATATGAT
ATTCTCTCGAAGTTGCCAAAATCTGATTTGCGTAACCTGTGCACCCTTCT
TGGTCATGAGGGGCTATCAGATAAAGTTTACATGTTAGCTGGTGAGGTGC
TAAAGAAGTTAGCCTCAGTTGCTGCACTTCATCGCAAGTTCTTTGCTTCA
GAGCTTTCTCAACTGGCTCATAGTTTGAGCATTTCAGCTGTCAATGAGCT
TGTGACACTGAGAGATACACATATGCTGGGTCTGAGTGCTGGTTCCATGG
CTGGAGCTGCAATTTTACGTGTGTTACAAGCACTTAGCTCGCTCACATCA
GCTAGTATTGGGGAGAGTGGAGGTCAGGGGTGTGATGGAGAACAGGAGGA
GCAAGCAACCATGTGGAATTTAAATCTTGCACTGGAGCCATTGTGGCAAG
AATTGAGTGATTGTATTACCATGACTGAAACACAGCTGGGTCAGAGCTCT
TTCTGCCCGAGTGTGTCAAATATGAATGTTGGGGAGCCTCTACCTGGAAC
CTCCAGTACATCACCTCTTCCGCCGGGAACTCAGAGACTCCTGCCTTTCA
TTGAGGCTTTCTTTGTTTTGTGTGAAAAGCTACAAGCAAACCATATTATG
ATCCAGCAAGATCATGCAGATGTAACTGCAACAGAAGTCAAAGAGTCTGC
CGGATGTTCATAT
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