CB290346

Overview
NameCB290346
Unique NameCB290346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290346_ssr349 microsatellite CB290346_ssr349:349..360. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10108 contig Csv1_Contig10108:53..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290346 vs. ExPASy Swiss-Prot
Match: TAF7_MOUSE (Transcription initiation factor TFIID subunit 7 OS=Mus musculus GN=Taf7 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.068e-11
Identity = 46/148 (31.08%), Postives = 64/148 (43.24%), Query Frame = -3 
Query:  347 DGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE----------------------YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGAPVENADPEVNEQEEEG 700
            DGR G   +        L+DLPCV ES KT D     KTADI QM++    GD  P   E                      + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ E  E E +G
Sbjct:   50 DGRHGIVRVDRVPLAAKLVDLPCVTESLKTIDKKTFYKTADISQMLVATVDGDLYPPVEEAAATADPKANKKKDKDKEKKFVWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDETKETENQG 196

HSP 2 Score: 20.7866 bits (42), Expect = 2.068e-11
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = -2 
Query:  777 QFILRVPPSVA 809
            QFILR+PP  A
Sbjct:   15 QFILRLPPEYA 25
[Close]
BLAST of CB290346 vs. ExPASy Swiss-Prot
Match: TAF7_CRIGR (Transcription initiation factor TFIID subunit 7 OS=Cricetulus griseus GN=TAF7 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.525e-11
Identity = 46/148 (31.08%), Postives = 65/148 (43.92%), Query Frame = -3 
Query:  347 DGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE----------------------YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGAPVENADPEVNEQEEEG 700
            DGR G   +        L+DLPCV+ES KT D     KTADI QM++    GD  P   E                      + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ E  E E +G
Sbjct:   50 DGRHGIVRVDRVPLAAKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVAPADPKASKKKDKDKEKKFVWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDETKETENQG 196

HSP 2 Score: 21.1718 bits (43), Expect = 4.525e-11
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = -2 
Query:  765 QFILRVPPSVAEPDR 809
            QFILR+PP  A   R
Sbjct:   15 QFILRLPPEYASTVR 29
[Close]
BLAST of CB290346 vs. ExPASy Swiss-Prot
Match: TAF7_PONAB (Transcription initiation factor TFIID subunit 7 OS=Pongo abelii GN=TAF7 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 7.618e-11
Identity = 46/148 (31.08%), Postives = 65/148 (43.92%), Query Frame = -3 
Query:  347 DGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE----------------------YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGAPVENADPEVNEQEEEG 700
            DGR G   +        L+DLPCV+ES KT D     KTADI QM++    GD  P   E                      + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ E  E E +G
Sbjct:   50 DGRHGIVRVDRVPLASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDETKEAENQG 196

HSP 2 Score: 21.1718 bits (43), Expect = 7.618e-11
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = -2 
Query:  765 QFILRVPPSVAEPDR 809
            QFILR+PP  A   R
Sbjct:   15 QFILRLPPEYASTVR 29
[Close]
BLAST of CB290346 vs. ExPASy Swiss-Prot
Match: TAF7_MACFA (Transcription initiation factor TFIID subunit 7 OS=Macaca fascicularis GN=TAF7 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 7.618e-11
Identity = 46/148 (31.08%), Postives = 65/148 (43.92%), Query Frame = -3 
Query:  347 DGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE----------------------YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGAPVENADPEVNEQEEEG 700
            DGR G   +        L+DLPCV+ES KT D     KTADI QM++    GD  P   E                      + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ E  E E +G
Sbjct:   50 DGRHGIVRVDRVPLASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDETKEAENQG 196

HSP 2 Score: 21.1718 bits (43), Expect = 7.618e-11
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = -2 
Query:  765 QFILRVPPSVAEPDR 809
            QFILR+PP  A   R
Sbjct:   15 QFILRLPPEYASTVR 29
[Close]
BLAST of CB290346 vs. ExPASy Swiss-Prot
Match: TAF7_HUMAN (Transcription initiation factor TFIID subunit 7 OS=Homo sapiens GN=TAF7 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 7.618e-11
Identity = 46/148 (31.08%), Postives = 65/148 (43.92%), Query Frame = -3 
Query:  347 DGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE----------------------YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGAPVENADPEVNEQEEEG 700
            DGR G   +        L+DLPCV+ES KT D     KTADI QM++    GD  P   E                      + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ E  E E +G
Sbjct:   50 DGRHGIVRVDRVPLASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDETKEAENQG 196

HSP 2 Score: 21.1718 bits (43), Expect = 7.618e-11
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = -2 
Query:  765 QFILRVPPSVAEPDR 809
            QFILR+PP  A   R
Sbjct:   15 QFILRLPPEYASTVR 29
The following BLAST results are available for this feature:
BLAST of CB290346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TAF7_MOUSE2.068e-1131.08Transcription initiation factor TFIID subunit 7 OS... [more]
TAF7_CRIGR4.525e-1131.08Transcription initiation factor TFIID subunit 7 OS... [more]
TAF7_PONAB7.618e-1131.08Transcription initiation factor TFIID subunit 7 OS... [more]
TAF7_MACFA7.618e-1131.08Transcription initiation factor TFIID subunit 7 OS... [more]
TAF7_HUMAN7.618e-1131.08Transcription initiation factor TFIID subunit 7 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290346 ID=CB290346; Name=CB290346; organism=Citrus sinensis; type=EST; length=813bp
TTTTTTTTTTTTTTTTTGAGTACAAATTTTTCATAGTCTTACCTTTTAGC
TATCTAATGGCATACAGTATAAGTTACAGAACCCGTAAGCTGAAATTATA
CACCAAAAAGCCGCATGAACAAACTAAAGACAAGTACTAATCTGACACCA
ATCCAGCTACATATTCATCGATAGTATTATAAATAAATCAACCCACGAAT
GAGATATGCAGTTACATCGAATCATCAGACTCATCAGAGTCGCTTCTTGC
AGGGGCTCCAGTGTTAGCTCCAGCCTCCGCAATATCAGGTTGCTTTAGTT
GAGGGGAAGGGGCATCCTTCCTGTTTGCATGACGTGCATTCCCATCACCT
TCTTCTTCTTGCTCGTTCACTTCAGGATCTGCATTTTCGACTGGTGCACC
GGTCATGATGTTCAACAAATCTTTCTCGACGCGCTGTACGAGTTCAGGAT
TGAGATCCGGCTCCCTTCGAAATCTTCGCTTACGAGCATCCCTCATTGGA
GGGGTAAGACCATGTCTGTACTCCACTGCATCTGGAGTAGAGTCACCTGG
CTCTCTAACCATAATCATCTGGCCAATGTCTGCAGTTTTAACTAGAGCAC
AGTCATCATAAGTTTTGAATGACTCCACAACACAAGGAAGATCCATGAGA
GATACTGGAAAATGGTCATTGCCTATGACAAACGTGCCACTCCTCCCGTC
CTCACAAAAAGACAAATCCAGTGATTTGTCCTCTTCTGAAGACTCATTTT
CACTCAAAAGGCGATCTATCCGGCTCAGCAACTGAAGGCGGAACTCGCAA
TATGAACTGCCCT
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