CB290347

Overview
NameCB290347
Unique NameCB290347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290347_ssr458 microsatellite CB290347_ssr458:458..469. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10108 contig Csv1_Contig10108:48..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290347 vs. ExPASy Swiss-Prot
Match: TAF7_MOUSE (Transcription initiation factor TFIID subunit 7 OS=Mus musculus GN=Taf7 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.392e-12
Identity = 55/184 (29.89%), Postives = 75/184 (40.76%), Query Frame = 1
Query:   10 QFILRVPPSVAHRIDRXXXXXXXXXXXXXXXXXXXQDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE----------------------YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEG 471
            QFILR+PP  A  + R                    DGR G   +        L+DLPCV ES KT D     KTADI QM++    GD  P   E                      + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ E  E E +G
Sbjct:   15 QFILRLPPEYAATV-RRAVQSGHVNLKDKLSIELHPDGRHGIVRVDRVPLAAKLVDLPCVTESLKTIDKKTFYKTADISQMLVATVDGDLYPPVEEAAATADPKANKKKDKDKEKKFVWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDETKETENQG 196          
BLAST of CB290347 vs. ExPASy Swiss-Prot
Match: TAF7_CRIGR (Transcription initiation factor TFIID subunit 7 OS=Cricetulus griseus GN=TAF7 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12
Identity = 55/184 (29.89%), Postives = 76/184 (41.30%), Query Frame = 1
Query:   10 QFILRVPPSVAHRIDRXXXXXXXXXXXXXXXXXXXQDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE----------------------YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEG 471
            QFILR+PP  A  + R                    DGR G   +        L+DLPCV+ES KT D     KTADI QM++    GD  P   E                      + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ E  E E +G
Sbjct:   15 QFILRLPPEYASTV-RRAVQSGHVNLKDRLTIELHPDGRHGIVRVDRVPLAAKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVAPADPKASKKKDKDKEKKFVWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDETKETENQG 196          
BLAST of CB290347 vs. ExPASy Swiss-Prot
Match: TAF7_PONAB (Transcription initiation factor TFIID subunit 7 OS=Pongo abelii GN=TAF7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.091e-12
Identity = 55/184 (29.89%), Postives = 76/184 (41.30%), Query Frame = 1
Query:   10 QFILRVPPSVAHRIDRXXXXXXXXXXXXXXXXXXXQDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE----------------------YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEG 471
            QFILR+PP  A  + R                    DGR G   +        L+DLPCV+ES KT D     KTADI QM++    GD  P   E                      + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ E  E E +G
Sbjct:   15 QFILRLPPEYASTV-RRAVQSGHVNLKDRLTIELHPDGRHGIVRVDRVPLASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDETKEAENQG 196          
BLAST of CB290347 vs. ExPASy Swiss-Prot
Match: TAF7_MACFA (Transcription initiation factor TFIID subunit 7 OS=Macaca fascicularis GN=TAF7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.091e-12
Identity = 55/184 (29.89%), Postives = 76/184 (41.30%), Query Frame = 1
Query:   10 QFILRVPPSVAHRIDRXXXXXXXXXXXXXXXXXXXQDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE----------------------YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEG 471
            QFILR+PP  A  + R                    DGR G   +        L+DLPCV+ES KT D     KTADI QM++    GD  P   E                      + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ E  E E +G
Sbjct:   15 QFILRLPPEYASTV-RRAVQSGHVNLKDRLTIELHPDGRHGIVRVDRVPLASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDETKEAENQG 196          
BLAST of CB290347 vs. ExPASy Swiss-Prot
Match: TAF7_HUMAN (Transcription initiation factor TFIID subunit 7 OS=Homo sapiens GN=TAF7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.091e-12
Identity = 55/184 (29.89%), Postives = 76/184 (41.30%), Query Frame = 1
Query:   10 QFILRVPPSVAHRIDRXXXXXXXXXXXXXXXXXXXQDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE----------------------YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEG 471
            QFILR+PP  A  + R                    DGR G   +        L+DLPCV+ES KT D     KTADI QM++    GD  P   E                      + HG+T P+++ RKRRFR+         PD+  E+ + +  D   + T   +  A+ E  E E +G
Sbjct:   15 QFILRLPPEYASTV-RRAVQSGHVNLKDRLTIELHPDGRHGIVRVDRVPLASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDETKEAENQG 196          
BLAST of CB290347 vs. ExPASy Swiss-Prot
Match: TAF7L_MOUSE (Transcription initiation factor TFIID subunit 7-like OS=Mus musculus GN=Taf7l PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.454e-11
Identity = 48/164 (29.27%), Postives = 70/164 (42.68%), Query Frame = 1
Query:   10 QFILRVPPSVAHRIDRXXXXXXXXXXXXXXXXXXXQDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMV----------REPGDSTPDAV-------------EYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVE 432
            QFILR+PP  A+ + R                    DG      + N   P  L++LPCV+ S KT D     KTAD+ QM++            EP  ST   V              ++HG+TPP+++ RK+RFR+     P++ Q  E +        +VE
Sbjct:  109 QFILRLPPEQAYAV-RKIIHSRNAAWKDKLKIDFSPDGHHAVVQVDNVSLPAKLVNLPCVIGSLKTIDRKTFYKTADVSQMLVCSPEGEPHSPPEEPVVSTGPTVIGISEGKAERKKYNWKHGITPPLKNVRKKRFRKTTKKLPDVKQVDEINFSEYTQSPSVE 271          
The following BLAST results are available for this feature:
BLAST of CB290347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TAF7_MOUSE2.392e-1229.89Transcription initiation factor TFIID subunit 7 OS... [more]
TAF7_CRIGR5.329e-1229.89Transcription initiation factor TFIID subunit 7 OS... [more]
TAF7_PONAB9.091e-1229.89Transcription initiation factor TFIID subunit 7 OS... [more]
TAF7_MACFA9.091e-1229.89Transcription initiation factor TFIID subunit 7 OS... [more]
TAF7_HUMAN9.091e-1229.89Transcription initiation factor TFIID subunit 7 OS... [more]
TAF7L_MOUSE3.454e-1129.27Transcription initiation factor TFIID subunit 7-li... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290347 ID=CB290347; Name=CB290347; organism=Citrus sinensis; type=EST; length=778bp
GTCTTTTGGCAGTTCATATTGCGAGTTCCGCCTTCAGTTGCCCATCGGAT
AGATCGCCTTTTGAGTGAAAATGAGTCTTCAGAAGAGGACAAATCACTGG
ATTTGTCTTTTTCCCAGGACGGGAGGAGTGGCACGTTTGTCATAGGCAAT
GACCATTTTCCAGTATCTCTCATGGATCTTCCTTGTGTTGTGGAGTCATT
CAAAACTTATGATGACTGTGCTCTAGTTAAAACTGCAGACATTGGCCAGA
TGATTATGGTTAGAGAGCCAGGTGACTCTACTCCAGATGCAGTGGAGTAC
AGACATGGTCTTACCCCTCCAATGAGGGATGCTCGTAAGCGAAGATTTCG
AAGGGAGCCGGATCTCAATCCTGAACTCGTACAGCGCGTCGAGAAAGATT
TGTTGAACATCATGACCGGTGCAACAGTCGAAAATGCAGATCCTGAAGTG
AACGAGCAAGAAGAAGAAGGTGATGGGAATGCACGTCATGCAAACAGGAA
GGATGCACCTTCACCTCAACTAAAGCAACCTGATATTGCGGAGGCTGGAG
CTAACACTGGAGCACCTGCAAGAAGCGACTCTGATGAGTCTGATGATTCG
ATGTAACTGCATATCTCATTCGTGGGTTGATTTATTTATAATACTATCGA
TGAATATGTAGCTGGATTGGTGTCAGATTAGTACTTGTCTTTAGTTTGTT
CATGCGGCTTTTTGGTGTATAATTTCAGCTTGCTGCTTCTGTAACTTATA
CTGTATGCCATTAGATAGCTTTGAAATA
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