CB290353

Overview
NameCB290353
Unique NameCB290353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3714 contig Csv1_Contig3714:12..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.222e-26
Identity = 58/99 (58.59%), Postives = 70/99 (70.71%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFID +YMAYMFKYDS HG FKGT+ V + S + ++G+ +KVF++RDPA IPWG  G DYVVES+GVF
Sbjct:    3 KVGINGFGRIGRIVLRNALQFQDIEVVAVNDPFIDLEYMAYMFKYDSVHGRFKGTVEVKNGSFV-VDGRPMKVFAERDPAAIPWGSVGADYVVESTGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.950e-26
Identity = 60/100 (60.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:  367 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            TKVGINGFGRIGR+                NDPFID  YM YMFKYDSTHG FKG +    D  L I GK I VF +RDPA IPWG  G DYVVES+GVF
Sbjct:    3 TKVGINGFGRIGRIVLRNALEHGDIDVVAINDPFIDLDYMVYMFKYDSTHGRFKGKVET-KDGKLVIEGKPISVFGERDPAAIPWGKAGADYVVESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.950e-26
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG FKGT+   ++  L INGK I +F +RDPA I WGD G +YVVES+GVF
Sbjct:    3 KVGVNGFGRIGRLVTRAAFTSGKVEVVAINDPFIDLNYMVYMFQYDSTHGKFKGTVKA-ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.443e-26
Identity = 56/99 (56.57%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFI+ KY AYM KYDSTHG FKG I     + L +N K I  + +RDPA IPWG +GVDYVVES+GVF
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHDDVEIVAVNDPFIETKYAAYMLKYDSTHGQFKGDIQHSSSNNLTVNNKTIHFYQERDPANIPWGKHGVDYVVESTGVF 102          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.440e-25
Identity = 58/99 (58.59%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFID +YM YMFKYDSTHGVFKG++  + D  L I GK I V+ +RDPA I WG  G DYVVES+GVF
Sbjct:    4 KVGINGFGRIGRIVLRNAIIHGDIDVVAINDPFIDLEYMVYMFKYDSTHGVFKGSVE-IKDGKLVIEGKPIVVYGERDPANIQWGAAGADYVVESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.440e-25
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKGTI+V + + L +NGK +  + +RDPA IPWG +GV+YVVES+GVF
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHGEVNVVAVNDPFIETHYAAYMLKYDSTHGQFKGTIDV-NSNGLTVNGKAVTFYQERDPASIPWGKHGVEYVVESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.881e-25
Identity = 56/99 (56.57%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVG+NGFGRIGRL                NDPFID  YM YMFKYDSTHG FKGT+   ++  L ING  I +F +RDP+ I WGD G +YVVES+GVF
Sbjct:    3 KVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFKGTVK-AENGKLVINGNAITIFQERDPSNIKWGDAGAEYVVESTGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.457e-25
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFID +Y AYMFKYDSTHG FKG +   D   + I+GK I+VF +RDP+ IPWG  G DYVVES+GVF
Sbjct:    4 KVGINGFGRIGRIVLRNALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFKGKVEAKDGGLI-IDGKHIQVFGERDPSNIPWGKAGADYVVESTGVF 101          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.457e-25
Identity = 56/99 (56.57%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVG+NGFGRIGRL                NDPFID  YM YMF+YDSTHG F GT+   ++  L INGK I +F +RDPA I WGD G +YVVES+GVF
Sbjct:    3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA-ENGKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGVF 100          
BLAST of CB290353 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.457e-25
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  370 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 666
            KVGINGFGRIGR+                NDPFI+ KY  YM KYDSTHGVFKGTI V   S L +NGK +K +++RDP+ IPW D G +Y+VES+GVF
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIEPKYAEYMLKYDSTHGVFKGTIQV-SGSDLIVNGKTVKFYTERDPSAIPWKDTGAEYIVESTGVF 101          
The following BLAST results are available for this feature:
BLAST of CB290353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
G3P2_AGABI2.222e-2658.59Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P_CRYCU4.950e-2660.00Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_CRIGR4.950e-2657.58Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_PARBA8.443e-2656.57Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_PHARH1.440e-2558.59Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3P_AJECA1.440e-2556.57Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P_COTJA1.881e-2556.57Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_YARLI2.457e-2557.58Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_SPECI2.457e-2556.57Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_PODAN2.457e-2556.57Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ah12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290353 ID=CB290353; Name=CB290353; organism=Citrus sinensis; type=EST; length=667bp
TGCCGTTAGACTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCCTTGAT
AGGGTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAA
TGGCCTTCTCTTCTCCCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGC
GCCGACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGC
TGCTTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTC
CAAGTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATT
CAACCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATC
ACGGAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTG
GAAGGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTG
GCGGTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAA
GTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATG
ACTCCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGG
GACCCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGA
ATCTTCTGGAGTCTTTA
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