CB290363

Overview
NameCB290363
Unique NameCB290363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290363 vs. ExPASy Swiss-Prot
Match: KASC1_ARATH (3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=2 SV=2)

HSP 1 Score: 428.713 bits (1101), Expect = 1.641e-119
Identity = 213/248 (85.89%), Postives = 223/248 (89.92%), Query Frame = 2
Query:   11 LRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 754
            L+YCIVAGKKALE A+LG D    IDK +A             FS+GVQ LIEKGHR+I+PFFIPYAITNMGSALLAIDLG MGPNYSISTACATSNYCFYAAANHIRRGEAD+M+AGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDK RDGFVMGEGAGVLVMESLEHAMKRGAPI+AEYLGGAVNCDA+HMTDPRADGLGVSSCIE  LEDAGVSPEEVNYINAHATSTLAGDLAEINAI
Sbjct:  132 LKYCIVAGKKALESANLGGDKLNTIDKRKAGVLVGTGMGGLTVFSEGVQNLIEKGHRRISPFFIPYAITNMGSALLAIDLGLMGPNYSISTACATSNYCFYAAANHIRRGEADMMIAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKARDGFVMGEGAGVLVMESLEHAMKRGAPIVAEYLGGAVNCDAHHMTDPRADGLGVSSCIERCLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 379          
BLAST of CB290363 vs. ExPASy Swiss-Prot
Match: KASC1_HORVU (3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Hordeum vulgare GN=KAS12 PE=1 SV=1)

HSP 1 Score: 411.764 bits (1057), Expect = 2.076e-114
Identity = 207/250 (82.80%), Postives = 220/250 (88.00%), Query Frame = 2
Query:   11 LRYCIVAGKKALEDADLGA--DISKKIDKERAXXXXXXXXXXXXXFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 754
            +RYCI++GKKALE A LGA  D   K+D  RA             FSDGVQ LIEKG+RKI+PFFIPYAITNMGSALLAID+GFMGPNYSISTACATSNYCFYAAANHIRRGEAD+++AGGTEAAIIPIGLGGFVACRALSQRNDDP TA RPWDK+RDGFVMGEGAGVLVMESLEHAMKR APIIAEYLGGAVNCDAYHMTDPRADGLGVSSCI  SL DAGV+PEEVNYINAHATSTLAGDLAE+ AI
Sbjct:  119 IRYCILSGKKALESAGLGAGSDAHVKLDVGRAGVLVGTGMGGLSVFSDGVQNLIEKGYRKISPFFIPYAITNMGSALLAIDVGFMGPNYSISTACATSNYCFYAAANHIRRGEADIIVAGGTEAAIIPIGLGGFVACRALSQRNDDPITACRPWDKERDGFVMGEGAGVLVMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCITMSLRDAGVAPEEVNYINAHATSTLAGDLAEVRAI 368          
BLAST of CB290363 vs. ExPASy Swiss-Prot
Match: FABF_VIBCH (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio cholerae GN=fabF PE=3 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 4.542e-61
Identity = 123/250 (49.20%), Postives = 165/250 (66.00%), Query Frame = 2
Query:    5 LGLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 754
            L ++Y I AG +ALED+  G +++++ +  R                 G QALIEKG RK++PFF+P  I NM +  L+I  G  GPN +ISTAC T  +    AA  I  G+AD M+AGG E A  P+G+ GF A +ALS RND+PQ ASRPWDKDRDGFV+G+GAG++V+E  EHA  RGA I AE +G  ++ DAYHMT P  DG G +  +E+++ DAGV+ E++ Y+NAH TST AGD+AE+  I
Sbjct:   73 LFIQYGIAAGIQALEDS--GLEVNEE-NAARIGVAIGSGIGGLELIETGHQALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAGIMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEVKGI 319          
BLAST of CB290363 vs. ExPASy Swiss-Prot
Match: FABF_VIBHA (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio harveyi GN=fabF PE=3 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.047e-57
Identity = 118/250 (47.20%), Postives = 161/250 (64.40%), Query Frame = 2
Query:    5 LGLRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 754
            L ++Y I AG +AL+D+  G +I+++ +  R                 G  AL+EKG RK++PFF+P  I NM +  L+I  G  GPN +ISTAC T  +    AA  I  G+A+ M+AGG E A  P+G+ GF A +ALS RND+PQ ASRPWDK RDGFV+G+GAGV+V+E  EHA  RGA I AE +G  ++ DAYHMT P  DG G +  +E+++ DA ++  +V Y+NAH TST AGD+AEI  +
Sbjct:   73 LFIQYGIAAGIQALDDS--GLEITEE-NAARVGVAIGSGIGGLDLIEAGHSALVEKGPRKVSPFFVPSTIVNMVAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIAYGDAEAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKGRDGFVLGDGAGVMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDANITGTQVGYVNAHGTSTPAGDVAEIKGV 319          
BLAST of CB290363 vs. ExPASy Swiss-Prot
Match: FABF_SHIFL (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Shigella flexneri GN=fabF PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.864e-57
Identity = 115/248 (46.37%), Postives = 160/248 (64.52%), Query Frame = 2
Query:   11 LRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 754
            ++Y IVAG +A++D+  G +I+++ +  R                +   +L+  G RKI+PFF+P  I NM +  L I  G  GP+ SI+TAC +  +    AA  I  G+AD+M+AGG E A  P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+LV+E  EHA KRGA I AE +G  ++ DAYHMT P  +G G +  + ++L DAG+   ++ Y+NAH TST AGD AE  A+
Sbjct:   75 IQYGIVAGVQAMQDS--GLEITEE-NATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAV 319          
BLAST of CB290363 vs. ExPASy Swiss-Prot
Match: FABF_ECOLI (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli (strain K12) GN=fabF PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.864e-57
Identity = 115/248 (46.37%), Postives = 160/248 (64.52%), Query Frame = 2
Query:   11 LRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 754
            ++Y IVAG +A++D+  G +I+++ +  R                +   +L+  G RKI+PFF+P  I NM +  L I  G  GP+ SI+TAC +  +    AA  I  G+AD+M+AGG E A  P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+LV+E  EHA KRGA I AE +G  ++ DAYHMT P  +G G +  + ++L DAG+   ++ Y+NAH TST AGD AE  A+
Sbjct:   75 IQYGIVAGVQAMQDS--GLEITEE-NATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAV 319          
BLAST of CB290363 vs. ExPASy Swiss-Prot
Match: FABF_ECOL6 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli O6 GN=fabF PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.864e-57
Identity = 115/248 (46.37%), Postives = 160/248 (64.52%), Query Frame = 2
Query:   11 LRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 754
            ++Y IVAG +A++D+  G +I+++ +  R                +   +L+  G RKI+PFF+P  I NM +  L I  G  GP+ SI+TAC +  +    AA  I  G+AD+M+AGG E A  P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+LV+E  EHA KRGA I AE +G  ++ DAYHMT P  +G G +  + ++L DAG+   ++ Y+NAH TST AGD AE  A+
Sbjct:   75 IQYGIVAGVQAMQDS--GLEITEE-NATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAV 319          
BLAST of CB290363 vs. ExPASy Swiss-Prot
Match: FABF_ECO57 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli O157:H7 GN=fabF PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.864e-57
Identity = 115/248 (46.37%), Postives = 160/248 (64.52%), Query Frame = 2
Query:   11 LRYCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 754
            ++Y IVAG +A++D+  G +I+++ +  R                +   +L+  G RKI+PFF+P  I NM +  L I  G  GP+ SI+TAC +  +    AA  I  G+AD+M+AGG E A  P+G+GGF A RALS RND+PQ ASRPWDK+RDGFV+G+GAG+LV+E  EHA KRGA I AE +G  ++ DAYHMT P  +G G +  + ++L DAG+   ++ Y+NAH TST AGD AE  A+
Sbjct:   75 IQYGIVAGVQAMQDS--GLEITEE-NATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAV 319          
BLAST of CB290363 vs. ExPASy Swiss-Prot
Match: FABF_COXBU (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Coxiella burnetii GN=fabF PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.864e-57
Identity = 111/199 (55.78%), Postives = 138/199 (69.35%), Query Frame = 2
Query:  158 ALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 754
            AL+  G RKI+PFFIP AI NM S +++I     GPN SI TAC T  +    AA  I   +AD M+AGGTE A  P+G+GGF A RALS RND+P+ ASRPWDK RDGFV+GEGA  +V+E LEHA KR A I AE +G  ++ DAYHMT P  +  G ++C+++SL DAG++PE V+YINAH TST A D  E  AI
Sbjct:  121 ALLTSGPRKISPFFIPGAIINMASGMVSIKYDLKGPNISIVTACTTGLHNIGHAARMIAHNDADAMIAGGTEMASTPLGIGGFAAVRALSTRNDEPEKASRPWDKGRDGFVLGEGAACVVVEELEHAKKRNATIYAEIIGFGMSGDAYHMTRPDPEAEGFTTCMKNSLRDAGIAPERVDYINAHGTSTPAADPLEARAI 319          
BLAST of CB290363 vs. ExPASy Swiss-Prot
Match: FABF_SYNY3 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Synechocystis sp. (strain PCC 6803) GN=fabF PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 9.172e-54
Identity = 111/246 (45.12%), Postives = 148/246 (60.16%), Query Frame = 2
Query:   17 YCIVAGKKALEDADLGADISKKIDKERAXXXXXXXXXXXXXFSDGVQALIEKGHRKITPFFIPYAITNMGSALLAIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCIESSLEDAGVSPEEVNYINAHATSTLAGDLAEINAI 754
            + + A ++A+ DA L   +  +++ +                 D    L++KG  + +PF IP  I NM S L AI+LG  GPN    TACA  +     A   ++ G A  M+ GGTEAAI P+   GF + RALS RNDDP  ASRP+DKDRDGFVMGEG+G+L++E LE A+ RGA I  E +G A+ CDAYH+T P  DG G +  I  +L+D+G+ PE V+YINAH TST A D+ E  AI
Sbjct:   80 FAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAI 322          
The following BLAST results are available for this feature:
BLAST of CB290363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
KASC1_ARATH1.641e-11985.893-oxoacyl-[acyl-carrier-protein] synthase I, chlor... [more]
KASC1_HORVU2.076e-11482.803-oxoacyl-[acyl-carrier-protein] synthase I, chlor... [more]
FABF_VIBCH4.542e-6149.203-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vib... [more]
FABF_VIBHA1.047e-5747.203-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vib... [more]
FABF_SHIFL8.864e-5746.373-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Shi... [more]
FABF_ECOLI8.864e-5746.373-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]
FABF_ECOL68.864e-5746.373-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]
FABF_ECO578.864e-5746.373-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]
FABF_COXBU8.864e-5755.783-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Cox... [more]
FABF_SYNY39.172e-5445.123-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Syn... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ba05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ba05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290363 ID=CB290363; Name=CB290363; organism=Citrus sinensis; type=EST; length=756bp
GCCCTTGGGTTTGAGGTACTGCATTGTTGCTGGCAAGAAGGCTCTCGAAG
ATGCGGATCTTGGTGCCGATATTTCTAAGAAGATTGATAAGGAACGGGCT
GGGGTTCTTGTGGGAACAGGAATGGGTGGTCTTACAGTCTTTTCTGATGG
AGTCCAGGCTCTAATAGAAAAAGGTCATAGAAAAATAACCCCGTTCTTCA
TTCCGTATGCTATAACAAACATGGGTTCTGCTTTGCTTGCAATTGACCTT
GGCTTCATGGGTCCAAATTATTCAATTTCAACTGCCTGTGCGACCTCCAA
TTATTGCTTTTATGCTGCCGCCAATCACATCCGTCGAGGAGAGGCTGATT
TGATGCTTGCTGGTGGAACTGAAGCAGCCATTATTCCTATTGGATTGGGT
GGTTTTGTTGCATGTAGAGCATTGTCTCAGAGAAATGATGACCCACAAAC
TGCTTCTAGGCCATGGGACAAAGATCGGGATGGCTTTGTCATGGGAGAAG
GTGCTGGAGTATTGGTGATGGAGAGCTTGGAACATGCAATGAAACGAGGT
GCACCGATCATAGCAGAGTACTTAGGGGGTGCTGTTAATTGTGATGCTTA
TCATATGACTGACCCCAGAGCTGATGGACTTGGAGTGTCTTCATGCATTG
AGAGCAGCCTTGAAGATGCTGGTGTGTCACCTGAGGAGGTCAACTACATA
AATGCTCACGCAACTTCCACTTTAGCTGGTGACCTGGCTGAGATAAATGC
TATTAA
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