CB290387

Overview
NameCB290387
Unique NameCB290387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5944 contig Csv1_Contig5944:8..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290387 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.079e-14
Identity = 57/142 (40.14%), Postives = 74/142 (52.11%), Query Frame = -3
Query:  292 LLGVSSGANIADFVARKAVEAGKLLDPVKVVAQVLMYPFFMGSVSTNSEIKLSNSYFYNKAMCLQAWKLFLPEKEFNLDHPAANPLIPERGPPLK--HMPPTLTVVAEHDWMRDRAIAYSEELRKVNVDAPLLDYKDAVHEF 711
            L G SSG NIA  VA +A   G     VKV+  +L++P F G   T SE  L   YF         W+ +LPE E + DHPA NP  P RG  LK  + P +L VVA  D ++D  +AY + L+K  ++  LL  K A   F
Sbjct:  187 LAGDSSGGNIAHNVAVRATNEG-----VKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGE-DRDHPACNPFGP-RGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLLYLKQATIGF 321          
BLAST of CB290387 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14
Identity = 57/145 (39.31%), Postives = 76/145 (52.41%), Query Frame = -3
Query:  283 LLGVSSGANIADFVARKAVEAGKLLDPVKVVAQVLMYPFFMGSVSTNSEIKLSNSYFYNKAMCLQAWKLFLPEKEFNLDHPAANPLIPERGPPLKHM--PPTLTVVAEHDWMRDRAIAYSEELRKVNVDAPLLDYKDAVHEFATL 711
            L G SSG NIA  VA +A E+G     + V+  +L+ P F G+  T SE  L   YF         WK FLPE E + +HPA NP  P RG  L+ +  P +L VVA  D +RD  +AY+E L+K   +  L+  + A   F  L
Sbjct:  187 LAGDSSGGNIAHNVALRAGESG-----IDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGE-DREHPACNPFSP-RGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYLL 324          
BLAST of CB290387 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 53/148 (35.81%), Postives = 75/148 (50.68%), Query Frame = -3
Query:  283 RCVLLGVSSGANIADFVARKAVEAGKLLDPVKVVAQVLMYPFFMGSVSTNSEIKLSNSYFYNKAMCLQAWKLFLPEKEFNLDHPAANPLIPERGPPLKHM--PPTLTVVAEHDWMRDRAIAYSEELRKVNVDAPLLDYKDAVHEFATL 720
            R  L G SSG NI   VA +AVE+      + V+  +L+ P F G+  T SE +L   YF         W+ FLPE E + +HPA +P  P R   L+ +  P +L VVA  D ++D  + Y+E L+K   +  LL  + A   F  L
Sbjct:  182 RIFLAGDSSGGNIVHNVAVRAVESR-----IDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGE-DREHPACSPFGP-RSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYLL 322          
BLAST of CB290387 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.261e-11
Identity = 50/130 (38.46%), Postives = 67/130 (51.54%), Query Frame = -3
Query:  343 QNRCVLLGVSSGANIADFVARKAVEAGKLLDPVKVVAQVLMYPFFMGSVSTNSEIKLSNSYFYNKAMCLQAWKLFLPEKEFNLDHPAANPLIPERGPPLKHMP--PTLTVVAEHDWMRDRAIAYSEELRK 726
            Q R  L G SSG NIA  VA +A + G     VKV   +L+   F G+  T SE +L   YF         WK +LPE + + DHPA NP  P  G  L  +P   +L +V+  D   DR +AY++ LR+
Sbjct:  189 QARVFLSGDSSGGNIAHHVAVRAADEG-----VKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPE-DADRDHPACNPFGP-NGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALRE 311          
The following BLAST results are available for this feature:
BLAST of CB290387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L2_ARATH2.079e-1440.14Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH2.716e-1439.31Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L3_ARATH1.648e-1135.81Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GID1_ORYSJ6.261e-1138.46Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01bb07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290387 ID=CB290387; Name=CB290387; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTGAGAAGAACAATGCTTTTCATTCAGTTTCATTTTTCTACA
TACAACATATAATACAGCTAAATAATATGTATAAATGAATGTACCCCAAC
GGCCTTTAACAAGCAGAAAACCTGAAATCCCTATTCCTCAACACACAAAA
ATGATGATTGCCTTTCCTTTTCTAATCTATTTAGTACGAGAATTCATGGC
CTCTTATTGATATATATTTCTTGACCCATATTGATATGTCTTCTGCACAT
GCAAGGGCTTGTGGCGTCTGCAAGAGAATATCAAGAGTAGCAAACTCATG
GACGGCATCCTTGTAATCAAGAAGCGGTGCATCCACGTTGACCTTCCGCA
GTTCTTCTGAGTAGGCGATGGCTCGATCCCTCATCCAGTCATGCTCGGCA
ACAACTGTAAGGGTTGGCGGCATGTGCTTTAGAGGTGGCCCTCTCTCAGG
AATGAGAGGGTTGGCGGCTGGGTGATCTAGGTTGAATTCTTTCTCAGGTA
GGAAAAGTTTCCATGCCTGTAAGCACATAGCCTTGTTGTAGAAGTAGGAA
TTTGAGAGCTTAATTTCAGAATTTGTGGAAACACTCCCCATAAAGAAAGG
GTACATGAGAACTTGTGCCACCACCTTAACAGGATCCAAAAGCTTGCCTG
CTTCTACAGCCTTCCTAGCCACAAAGTCTGCTATGTTTGCACCACTGCTT
ACTCCAAGGAGAACACACCTGTTTTGATAACAGGACTAACTTAGTTTTTG
TTTAAACAGAAATGAATTGGAAATTAAAAATCAATTGAATAAGGTATAAA
GCAAAT
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