CB290426

Overview
NameCB290426
Unique NameCB290426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9076 contig Csv1_Contig9076:42..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290426 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.512e-69
Identity = 123/166 (74.10%), Postives = 140/166 (84.34%), Query Frame = -2
Query:  244 DLVSILITIIWLAFAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLVEPHKYFLLALPRVLQGTKYMAVVDTLFTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXRNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 741
            DLVS++ TIIWLA AQHAALNFGQYPYGGYVPNRPPLMRRL+PDE+DPE+TSF+ +P KYF  ++P +LQ TK+MAVVDTL THSPDEEY+GERQQP IW+GD EI +AF+ FSA           RN DPSRRNRCGAGVLPYEL+ PSSEPGVTC+GVPNSVSI
Sbjct:  761 DLVSVITTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDESDPEFTSFIEDPQKYFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVPNSVSI 926          
BLAST of CB290426 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.183e-68
Identity = 122/166 (73.49%), Postives = 138/166 (83.13%), Query Frame = -2
Query:  244 DLVSILITIIWLAFAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLVEPHKYFLLALPRVLQGTKYMAVVDTLFTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXRNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 741
            DLVSIL T+IWLA AQHAALNFGQYPYGGYVPNRPPLMRRL+PDE+DPEY SF+  P KY+  ++P + Q +K+MAVVDTL THSPDEEY+GERQQP IW+GD EI EAF+ F+A           RN+DP RRNRCGAGVLPYELLVPSSEPGVTC+GVPNSVSI
Sbjct:  754 DLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDESDPEYASFISHPEKYYFSSMPSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVPSSEPGVTCRGVPNSVSI 919          
BLAST of CB290426 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.722e-55
Identity = 103/166 (62.05%), Postives = 121/166 (72.89%), Query Frame = -2
Query:  244 DLVSILITIIWLAFAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLVEPHKYFLLALPRVLQGTKYMAVVDTLFTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXRNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 741
            DL S+L T++WL  AQHAALNFGQYP GGY+PNRPPLMRRLVP E DPEY   + +PH++FL ALP + Q T +M V+DTL THS DEEYLGER     W+ D     A  EF+A           RN+DPSRRNRCGAGVLPYEL+ PSS PG+TC+GVPNSV+I
Sbjct:  735 DLASLLTTLVWLCSAQHAALNFGQYPLGGYIPNRPPLMRRLVPAEGDPEYAHLVADPHRFFLSALPSLTQTTTFMTVIDTLSTHSADEEYLGERPDE-AWTADPAALAAAREFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 899          
BLAST of CB290426 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.984e-53
Identity = 108/170 (63.53%), Postives = 127/170 (74.71%), Query Frame = -2
Query:  244 DLVSILITIIWLAFAQHAALNFGQYPYGGYVPNRPPLMRRLVPD-END-PEYTSFLVEPHKYFLLALPRVLQGTKYMAVVDTLFTHSPDEEYLGE-RQQPWI-WSGDGEITEAFFEFSAXXXXXXXXXXXRNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 741
            DL SIL T++WLA AQHAALNFGQYP GGYVPNRPPL+RRL+PD E D  EY +FL +PH++FL A+P VL+ TK+MAVVDTL THSPDEEYLGE R +  + W+ D     A   F+A           RN+D  R+NRCGAGVLPYELL PSS PGVTC+GVPNS+SI
Sbjct:  749 DLASILTTLVWLASAQHAALNFGQYPLGGYVPNRPPLIRRLLPDLERDAAEYAAFLADPHRFFLNAMPGVLEATKFMAVVDTLSTHSPDEEYLGEGRDEGGVPWTADEAAVAAHGMFAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSSPPGVTCRGVPNSISI 918          
BLAST of CB290426 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.687e-42
Identity = 88/167 (52.69%), Postives = 111/167 (66.47%), Query Frame = -2
Query:  244 DLVSILITIIWLAFAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLVEPHKYFLLALPRVLQGTKYMAVVDTLFTHSPDEEYLGE-RQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXRNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 741
            DL  IL  +IW+A  QHAA+NFGQYP+GGYVPNRP L+R+L+P E DP+Y  F+  P   FL +LP  LQ TK MAV +TL THSPDEEYL E R+    W  D ++ + F +FS            RN D   +NR GAG+ PYELL+P+S  GVT +G+PNS+SI
Sbjct:  751 DLSQILTNMIWIASGQHAAINFGQYPFGGYVPNRPTLLRKLIPQETDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIPNSISI 917          
BLAST of CB290426 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.057e-38
Identity = 80/168 (47.62%), Postives = 106/168 (63.10%), Query Frame = -2
Query:  244 DLVSILITIIWLAFAQHAALNFGQYPYGGYVPNRPPLMRRLVPDEN--DPEYTSFLVEPHKYFLLALPRVLQGTKYMAVVDTLFTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXRNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 741
            +LV IL  I+W+    HAA+NFGQY Y GY PNRP ++RR +P E   D E   F+  P +  L +LP  +Q  K MA +D L +HSPDEEY+GE  +P  W  +  +  AF +FS            RN++P  +NRCGAG++PYELL P SEPGVT +G+PNS+SI
Sbjct:  730 NLVQILTIIMWVTSGHHAAVNFGQYHYAGYFPNRPTVVRRNIPVEENRDDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEP-AWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEPGVTGRGIPNSISI 896          
BLAST of CB290426 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.889e-33
Identity = 76/166 (45.78%), Postives = 97/166 (58.43%), Query Frame = -2
Query:  244 DLVSILITIIWLAFAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLVEPHKYFLLALPRVLQGTKYMAVVDTLFTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXRNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 741
            DL+     I+W A A HAA+NFGQYPYGG + NRP L RR +P E  PEY   +  P K +L  +    +    ++V++ L  H+ DE YLGER+ P  W+ D +  EAF  F +           RNSDPS RNR G   LPY LL  SSE G+T KG+PNS+SI
Sbjct:  700 DLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRFIPAEGTPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETP-NWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI 864          
BLAST of CB290426 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.634e-33
Identity = 74/167 (44.31%), Postives = 101/167 (60.48%), Query Frame = -2
Query:  244 DLVSILITIIWLAFAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLVEPHKYFLLALPRVLQGTKYMAVVDTLFTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXRNSDPS-RRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 741
            DLV + + IIW+A A HAA+NFGQYPYGG + NRP   RRL+P++  PEY   +    K +L  +   L     ++V++ L TH+ DE YLG+R  P  W+ D +  +AF +F             RN+DPS + NR G   LPY LL PSSE G+T +G+PNS+SI
Sbjct:  674 DLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839          
BLAST of CB290426 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.478e-32
Identity = 76/169 (44.97%), Postives = 100/169 (59.17%), Query Frame = -2
Query:  244 LVSILITIIWLAFAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTS---FLVEPHKYFLLALPRVLQGTKYMAVVDTLFTHSPDEEYLG-ERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXRNSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 738
            L   L TI+W+A A HAA+NFGQY +GGY PNRP + R ++P E   +  +   FL  P +      P  +Q T  MAV+D L THS DEEYLG E+ +PW  + D  +  A+  F+A           RN D   +NRCGAG+LPY+L+ P S+ GVT  G+PNS SI
Sbjct:  775 LAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPW--NSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIPNSTSI 941          
BLAST of CB290426 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.930e-32
Identity = 78/171 (45.61%), Postives = 98/171 (57.31%), Query Frame = -2
Query:  244 LVSILITIIWLAFAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDP-EYTSFLVEPHKYFLLALPRVLQGTKYMAVVDTLFTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXRNSDPSRRNRCGAGVLPYELLVPSSEPGVTCK-----GVPNSVSI 738
            LV +L TI+W+  A HAA+NFGQYP  GYVPN P + RR +P E  P E  +F   P K +L  LP  LQ    MA +D L +H+ DEEY+G  Q+P  W  DGE+ +AF  F              N D SRRNR GAGV+PY LL P +   +  K     G+PNS+SI
Sbjct:  763 LVQVLATIMWVTSAHHAAVNFGQYPMAGYVPNHPSIARRNMPCEMGPEEMLAFKAAPEKVWLDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEP-AWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932          
The following BLAST results are available for this feature:
BLAST of CB290426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX4_ARATH1.512e-6974.10Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH2.183e-6873.49Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ4.722e-5562.05Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ1.984e-5363.53Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX6_ARATH2.687e-4252.69Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX23_HORVU1.057e-3847.62Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXX_SOYBN3.889e-3345.78Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX1_SOYBN6.634e-3344.31Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOXC2_ORYSJ1.478e-3244.97Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX22_HORVU1.930e-3245.61Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01bd08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01bd08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290426 ID=CB290426; Name=CB290426; organism=Citrus sinensis; type=EST; length=742bp
TTTTTTTTTTTTTTTTTGAACGGGAACTACCATTATTATTCTTGGATACT
CAATTGCATATACAATTCTAACTTTAATGGGCTCTCAATGGCACATAATT
ACTTAAAATCTAGCTTGGGACAAAATATTTGATTGGGATAATGACCATTA
ATAGCCGGCATCTCTACAGACTACAGATATCTAATATTTAAGTTATATAC
CAAAGTTGGTCAAACATGACCATGTGAGCTCCCTTTGGGCTCATATTGAT
ACACTATTTGGAACACCTTTGCATGTTACTCCAGGTTCCGAACTCGGTAC
CAGTAACTCATATGGTAAAACGCCGGCGCCGCACCGGTTCCTCCGGCTTG
GATCACTGTTTCTTTTCTCGATTTCTTTTTCTATCCGTCTTATCTCCGCA
GAAAATTCAAAAAATGCCTCGGTTATCTCACCATCGCCGGACCAAATCCA
CGGCTGTTGTCGTTCCCCGAGGTACTCCTCGTCCGGCGAATGTGTAAACA
ATGTGTCTACCACGGCCATGTATTTGGTCCCTTGTAATACCCTTGGCAAT
GCCAGCAGGAAATACTTGTGTGGTTCAACTAAAAAACTGGTATACTCGGG
GTCATTTTCGTCGGGTACTAATCTTCTCATTAGGGGAGGGCGATTGGGCA
CGTAACCACCATACGGGTACTGTCCAAAATTGAGTGCAGCGTGCTGTGCA
AATGCCAGCCAAATGATCGTAATTAGGATGGACACCAGATCA
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