CB290433

Overview
NameCB290433
Unique NameCB290433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290433 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.079e-39
Identity = 79/135 (58.52%), Postives = 98/135 (72.59%), Query Frame = -1
Query:  391 LVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIEPASQKAQNLVSEAQPGGPRAAVHYAAAESKPLLVTNSVKAWYKLNHYALFPPMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAFKQ 795
            LVFLD KV E S KFDEHAPP+AK+V +Q H LI  A++KAQ+ V EA+ GGP+AA +YAA E K  +VTNSVK W KLN Y     M D A+P AA +S +YN LV +MT  GY + GYLPLVP+DDI KA+++
Sbjct:   74 LVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208          
BLAST of CB290433 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18
Identity = 58/152 (38.16%), Postives = 80/152 (52.63%), Query Frame = -1
Query:  391 LVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIEPASQKAQNLVSEAQPGG-----------------PRAAVHYAAAESKPLLVTNSVKAWYKLNHYALFPPMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAFKQ 795
            L ++D+KVD +  + D   PP+ K+V++Q  S  + A   A+ L SE +  G                 P A   YA  E  P     +V AW KLN   LFP +A +AVPTAA  S+KYN  VV+  +KGY V  Y+PLVP + I+K F +
Sbjct:   83 LKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYE--PKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAE 232          
BLAST of CB290433 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.970e-17
Identity = 54/149 (36.24%), Postives = 80/149 (53.69%), Query Frame = -1
Query:  394 LVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIEPASQKAQNLVSEAQ-PGGPRAAVH-----YAAAES---------KPLLVTNSVKAWYKLNHYALFPPMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAFK 795
            L+F+D+KV+ +  + + H P L KR + Q  ++ + A + A  + SE Q PG    A +     Y+  E          +P+    +V AW  LN   LFP +A + VPTAA WS+KYN  V    ++GY V  YLPL+P + IAK F+
Sbjct:   81 LMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQ 229          
BLAST of CB290433 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.145e-15
Identity = 49/133 (36.84%), Postives = 70/133 (52.63%), Query Frame = -1
Query:  397 LVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIEPASQKAQNLVSEAQPGGPRAAVHYAAAESKPLLVTNSVKAWYKLNHYALFPPMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAF 795
            L + D+KV E     D H P   K+V+SQ           A+++VSE +  G         ++ +P     +V AW KLN   LFP +A+  +P AA  ++KYN ++V   +KGY V  YLPLVP + IAK F
Sbjct:   47 LKYADRKVGE----LDRHVPSNVKKVSSQ-----------ARSVVSEVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVF 164          
BLAST of CB290433 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.006e-15
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = -1
Query:  397 FLDKKVDEASRKFDEHAPPLAKRVASQVHSLIEPASQKAQNLVSEAQPGGPRAAVHYAAAESKPLLVTNSVKAWYKLNHYALFPPMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAF 789
            F+DK VD +    D   PP+ K+V++Q +S+ + A +   ++ S     G +       A  +P     +V  W  LN   L P +A++ VPTA  +S+KYN +V   T++GY V  YLPL+P + I K F
Sbjct:   69 FVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPTEKITKVF 199          
BLAST of CB290433 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.469e-12
Identity = 47/142 (33.10%), Postives = 73/142 (51.41%), Query Frame = -1
Query:  397 LVFLDKKVDEASRKFDEHAPP-------LAKRVASQVHS--LIEPASQKAQNLVSEAQPGGPRAAVHYAAAESKPLLVTNSVKAWYKLNHYALFPPMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAF 795
            L FLD+KV E+ ++ D   PP       LA+  A++V    L+  A+  A++ ++ A+P   RA   Y   E  P+    + +AW  LN   L P +    +P AA  S +YN  V +  K+G  V  YLPLVP + +++ F
Sbjct:   96 LKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAEP---RARDLYTRYE--PVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232          
BLAST of CB290433 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.469e-12
Identity = 47/142 (33.10%), Postives = 73/142 (51.41%), Query Frame = -1
Query:  397 LVFLDKKVDEASRKFDEHAPP-------LAKRVASQVHS--LIEPASQKAQNLVSEAQPGGPRAAVHYAAAESKPLLVTNSVKAWYKLNHYALFPPMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAF 795
            L FLD+KV E+ ++ D   PP       LA+  A++V    L+  A+  A++ ++ A+P   RA   Y   E  P+    + +AW  LN   L P +    +P AA  S +YN  V +  K+G  V  YLPLVP + +++ F
Sbjct:   96 LKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAEP---RARDLYTRYE--PVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232          
The following BLAST results are available for this feature:
BLAST of CB290433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y1736_ARATH4.079e-3958.52REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
Y3550_ARATH8.843e-1838.16REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI1.970e-1736.24Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
SRP_PHAVU3.145e-1536.84Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
SRPP_HEVBR7.006e-1534.35Small rubber particle protein OS=Hevea brasiliensi... [more]
Y5513_ORYSJ9.469e-1233.10REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI9.469e-1233.10REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01be02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01be02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290433 ID=CB290433; Name=CB290433; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTTTTTTTTGGCGGCGAAAAAACTCTTTTTGGCATTTTAGGG
AGCAGAATAAATATTTACCCTACCCCCAATGGTAATCTGAACCGAAACAA
ACAAAATATTCGGAAAACACAAAAAACAGAATTTATGAACCATTTATCTC
CCTTCACATATGGGGAAAACCAAGTCTTAAAGGGCATTTACAGATTACAA
ACCATACTGCCACTACCCGGCCACACCTTCAAGCCTAAAATTTTGCAAAC
CAAACCACTAAATGAAGCAAACTCATCAAACAAAAAGTAAATTCTTAGTC
AGAATCTGAGCTTGAATCCTTTTCCTTTGCATCTTCTTTCTTTGGAGCAT
CTTCTTTCTCTGGAGCATCTTCTTTCTTGGGAGCTTCACTCTGCTTAAAA
GCTTTGGCTATGTCATCAATGGGAACCAAAGGAAGATAGCCAAAGACTGG
GTAACCCTTCTTCGTCATCTCCACGACAAGATGGTTATACTTCTTGGACC
ACTGTGCAGCTGTGGGAACAGCCATATCTGCCATTGGGGGGAACAATGCA
TAGTGGTTTAGTTTATACCATGCTTTCACGGAATTTGTTACCAGAAGGGG
TTTAGACTCAGCAGCAGCATAATGGACAGCTGCTCGAGGCCCCCCGGGTT
GGGCCTCACTCACAAGATTTTGAGCTTTCTGTGATGCTGGTTCAATTAGA
CTATGTACTTGGCTGGCAACCCGCTTGGCCAAAGGGGGAGCGTGCTCGTC
AAACTTGCGTGAAGCCTCATCCACCTTCTTATCAAGAAAAACGAG
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