CB290439

Overview
NameCB290439
Unique NameCB290439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9059 contig Csv1_Contig9059:58..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.022e-69
Identity = 134/168 (79.76%), Postives = 141/168 (83.93%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           SFPYKEI NGMLWEVEGKWV+QGAVNVDIGANPSA          DQAVKVVDIVDTFRLQEQPAF+KKQFVTFMKRYIK LTPKL+AEKQELFKK+IEGATKFLLSKLSDLQFFVGESM DD  LV AYYK+GATDPTFLYFAYGLKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.747e-67
Identity = 130/168 (77.38%), Postives = 138/168 (82.14%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           SFPYKEI NG+LWEVEGKWVVQGAV+VDIGANPSA          DQAVKVVDIVDTFRLQEQPAF+KKQFVT+MKR+IKLLTPKL+ EKQE FKKNIEGATKFLLSKLSDLQFFVGESM DD  LV AYY+ GATDPTFLYFAY LKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.605e-65
Identity = 125/168 (74.40%), Postives = 138/168 (82.14%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           SFPY+EIENG+LWEV+GKWVVQGA++VDIGANPSA          DQAVKVVDIVDTFRLQEQP F+KKQFVTFMKRYIK L+ KL+AEKQE FKKNIEGATK+LL KL DLQFFVGESM DD GLV AYYK+GATDPTFLYF++GLKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.880e-64
Identity = 126/168 (75.00%), Postives = 137/168 (81.55%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           SF YKEIENGMLWEVEGKWVV+GAV+VDIGANPSA          D AVKVVDIVDTFRLQEQPAF+KKQFVTFMKR+IK LTPKL+AE+QELFKK+IEGATK+LLSK+ D QFFVGESM DDA LV AYYK+GA DPTFLYFAY LKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDAAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.438e-63
Identity = 125/170 (73.53%), Postives = 136/170 (80.00%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXD--QAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           SFPYKEI+NG+LWEV+GKWVVQGAV+VDIGANPSA             Q VKVVDIVDTFRLQEQP F+KKQFVT++KRYIKLLTPKLE E+QE FKKNIEGATKFLLSKLSDLQFFVGESM DD  LV A YKEGATDP F+YFA+GLKEVKC
Sbjct:    1 MLVYQDLLSGDELLSDSFPYKEIQNGVLWEVDGKWVVQGAVDVDIGANPSAEGADADADEGVDDQTVKVVDIVDTFRLQEQPPFDKKQFVTWVKRYIKLLTPKLEGEQQETFKKNIEGATKFLLSKLSDLQFFVGESMGDDTSLVFASYKEGATDPIFIYFAHGLKEVKC 170          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.580e-62
Identity = 121/168 (72.02%), Postives = 133/168 (79.17%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           SFPYKEI+NGMLWEV+GKWVVQGAV+V+IGANPSA          DQAVKVVDIVDTFRLQEQPAF+KKQFVT++KRYIK LTPKLE E QE FKKNIE ATKFLLSKL D QFFVGE M DD+ LV AYYK+G+ DPTFLY A GLKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.580e-62
Identity = 121/168 (72.02%), Postives = 132/168 (78.57%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           SFPYKE+ENG+LWEV+GKWVVQGAV+V+IGANPSA          DQAV+VVDIVDTFRLQEQPAF+KKQFVTFMKRYIK LTPKLE E QE FKKNIE ATKFLL K+ DLQFFVGESM DD  LV AYYKEG+ DP FLY A GLKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEVENGVLWEVQGKWVVQGAVDVNIGANPSAEGGCEDEGVDDQAVRVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLEGETQEAFKKNIEAATKFLLQKIKDLQFFVGESMHDDGALVFAYYKEGSADPPFLYIAPGLKEIKC 168          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.598e-62
Identity = 119/168 (70.83%), Postives = 133/168 (79.17%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           SFPYKE+ENGM+WEVEGKWVVQGAV+VDIGANPSA          DQAVKVVDIVDTFRLQEQP  +KKQF+ ++K++IKLLTPKLE EKQE FKKNIEGATKFLL KL D +FFVGESM DD+ +V AYY+EGATDPTFLY A  LKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 2.282e-61
Identity = 120/168 (71.43%), Postives = 131/168 (77.98%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           S+PYKEIENGMLWEVEGKWV +G V VDIGAN SA            AVKVVDIVD FRLQEQPAF+KKQF+ F+KRYIKLLTPKL+AEKQELFKK+IEGATK+LL KL DLQFFVGESM DD  LV AYYK+GA DPTFLYFAY LKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSYPYKEIENGMLWEVEGKWVTKGVVEVDIGANASAEGGEDEGVDDT-AVKVVDIVDVFRLQEQPAFDKKQFLGFVKRYIKLLTPKLDAEKQELFKKHIEGATKYLLCKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYALKEIKC 167          
BLAST of CB290439 vs. ExPASy Swiss-Prot
Match: TCTP_WHEAT (Translationally-controlled tumor protein homolog OS=Triticum aestivum GN=TCTP PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.980e-61
Identity = 117/168 (69.64%), Postives = 134/168 (79.76%), Query Frame = -1
Query:  276 MIVYQXXXXXXXXXXXSFPYKEIENGMLWEVEGKWVVQGAVNVDIGANPSAXXXXXXXXXXDQAVKVVDIVDTFRLQEQPAFEKKQFVTFMKRYIKLLTPKLEAEKQELFKKNIEGATKFLLSKLSDLQFFVGESMQDDAGLVLAYYKEGATDPTFLYFAYGLKEVKC 779
            M+VYQ           SFPY+E+ENG+LWEV+G WVVQGAV+VDIGANPSA          DQAVKVVDIVDTFRLQEQPAF+KKQF++ MKRYIK L+ KLE +  ++FKKN+E ATK+LLSKL DLQFFVGESM DD G+V AYYKEGA DPTFLYFA+GLKEVKC
Sbjct:    1 MLVYQDKLSGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFISHMKRYIKNLSAKLEGDDLDVFKKNVESATKYLLSKLKDLQFFVGESMHDDGGVVFAYYKEGAADPTFLYFAHGLKEVKC 168          
The following BLAST results are available for this feature:
BLAST of CB290439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
TCTP_ELAGV1.022e-6979.76Translationally-controlled tumor protein homolog O... [more]
TCTP_HEVBR4.747e-6777.38Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ2.605e-6574.40Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN2.880e-6475.00Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN2.438e-6373.53Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU1.580e-6272.02Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC1.580e-6272.02Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA4.598e-6270.83Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA2.282e-6171.43Translationally-controlled tumor protein homolog O... [more]
TCTP_WHEAT2.980e-6169.64Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01be05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01be05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290439 ID=CB290439; Name=CB290439; organism=Citrus sinensis; type=EST; length=809bp
TTTTTTTTTTTTTTTCTATTATCTGTATTCTTTTATTACTCACCCTTAAT
TAAGTATACATCTCCTCATCATCAGAAAGACAGAAAAGCATATTATTTAA
AGATAAAAAAAGTATCAACTTTGAACGCAGAGATCCTCAGAACACACTAT
TTTTATAATGCCTACTAAGAAGATCATAAATAAATTATATATCCTCAGCT
AAGGGCCTAAAACTAAAGGGGTTTACGCAGCCATTGAAAGCCAATAATCA
CCCGTATTCCATAGACTTGATTTTAACACTTAACTTCCTTTAATCCATAT
GCAAAGTACAGAAACGTTGGATCGGTGGCACCCTCCTTGTAGTATGCTAA
CACCAAGCCTGCATCGTCCTGCATGCTCTCACCCACAAAGAATTGAAGGT
CACTGAGCTTTGAAAGCAGGAACTTGGTAGCTCCCTCGATGTTCTTCTTA
AACAACTCTTGCTTCTCTGCTTCCAATTTGGGTGTCAACAATTTGATGTA
CCGCTTCATGAAGGTAACAAATTGCTTTTTTTCAAAAGCAGGTTGTTCCT
GAAGCCTGAAGGTATCCACAATATCGACAACCTTGACAGCTTGGTCATCG
ACACCTTCATCGTCATCTCCGCCTTCTGCAGAAGGGTTAGCCCCAATGTC
TACGTTCACTGCCCCTTGAACAACCCACTTGCCTTCAACTTCCCACAGCA
TTCCATTTTCAATTTCCTTGTACGGGAATGAGTCTGAGAGAAGCTCATCA
CCAGAGAGAAGATCCTGATAAACTATCATGTTTAACGTTTATGAAAATTT
TTTTTTTTT
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