CB290445

Overview
NameCB290445
Unique NameCB290445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290445 vs. ExPASy Swiss-Prot
Match: RIBD_SYNY3 (Riboflavin biosynthesis protein ribD OS=Synechocystis sp. (strain PCC 6803) GN=ribD PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.153e-28
Identity = 75/210 (35.71%), Postives = 114/210 (54.29%), Query Frame = 2
Query:  158 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLT 784
            G T+P+P  G +I     ++ G+G+    G    E+ A+   G   +GAT Y+N+EP +  G       A++QAGI +VVVG+ +P   + G+ +  LR  G++V V  E+          ++C  +N     R   + PF +FKYAMTLD            GKIA +  H++W++S ++R  V  LR +  AV++GGNTVRRDNP LT
Sbjct:   20 GKTAPNPLVGSVIVQGD-EIVGQGFHPQAGQPHGEIFALWEAGDRAKGATLYVNLEPCNHQGRTPPCTEAIIQAGIAKVVVGMVDPNPLVAGKGISRLRQAGIEVKVGVEE----------EACQRLNEAFCFRIKHQRPFGIFKYAMTLD------------GKIATAQAHSSWVTSSSARHWVHQLRSQCQAVIIGGNTVRRDNPLLT 206          
BLAST of CB290445 vs. ExPASy Swiss-Prot
Match: RIBD_AQUAE (Riboflavin biosynthesis protein ribD OS=Aquifex aeolicus GN=ribD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.585e-22
Identity = 74/213 (34.74%), Postives = 105/213 (49.30%), Query Frame = 2
Query:  149 KSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLT 784
            K  G+T P+P  G ++    GK+ G GY    G   AEV A+   G   +GAT Y+ +EP    G       A++++GI RVVV   +P   + G+ V  LR+ G++V V          EEAR+    +N       T   P+   K+A TLD            GK+A  +G + WI+SK SR     LR  + AV+VG NTV +D+P LT
Sbjct:   19 KRKGYTHPNPTVGAVVVKE-GKIVGLGYHEKAGKPHAEVMALGQAGEKAKGATLYVTLEPCTHFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGKGVEKLRNAGIEVDV------GVCEEEARE----LNEDFFTYITQERPYITLKWAQTLD------------GKLATLTGSSKWITSKESRKVAHILRREATAVLVGVNTVIKDDPHLT 208          
BLAST of CB290445 vs. ExPASy Swiss-Prot
Match: RIBD_ECOLI (Riboflavin biosynthesis protein ribD OS=Escherichia coli (strain K12) GN=ribD PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.391e-20
Identity = 66/208 (31.73%), Postives = 101/208 (48.56%), Query Frame = 2
Query:  164 TSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLT 784
            T P+PN GC+I    G++ GEGY    G   AEV A+   G   +GATAY+ +EP   HG       AL+ AG+ RVV  +++P   + G+ +  L+  G+ V          ++ EA +    +N   + R  +  P+   K   +LD            G+ A +SG + WI+S  +R  V  LR +S A++    TV  D+P LT
Sbjct:   21 THPNPNVGCVIVKD-GEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS------HGLMMSEAEQ----LNKGFLKRMRTGFPYIQLKLGASLD------------GRTAMASGESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALT 205          
BLAST of CB290445 vs. ExPASy Swiss-Prot
Match: RIBD_BUCBP (Riboflavin biosynthesis protein ribD OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ribD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.391e-20
Identity = 64/208 (30.77%), Postives = 101/208 (48.56%), Query Frame = 2
Query:  164 TSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLT 784
            TSP+PN GC+I  +   + G G+    G K AE+ A++  G   +GATAY+ +EP    G       AL + GI+RVV+   +P   + G  V+ L+  G+ V           I    K  + +N     R T+ +P+   K A ++D            G+ A ++G + WI+S  +R  V  +R +SDA++    T+  DNP LT
Sbjct:   21 TSPNPNVGCIIVNNN-IIVGSGWHKKTGMKHAEIYALKTSGEKAKGATAYITLEPCSHFGKTPPCCVALTKYGISRVVIATLDPNPKVSGNGVKWLKKHGILV----------TIGTLSKESIKINKGFFQRMTTGIPWIKLKLASSID------------GRTALNNGKSKWITSDKARHDVQHVREKSDAIISSSETILFDNPLLT 205          
BLAST of CB290445 vs. ExPASy Swiss-Prot
Match: RIBD_ACTPL (Riboflavin biosynthesis protein ribD OS=Actinobacillus pleuropneumoniae GN=ribD PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.391e-20
Identity = 70/209 (33.49%), Postives = 105/209 (50.24%), Query Frame = 2
Query:  158 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRL 781
            G+T+P+P  GC+I  + G++  EGY    G   AE  AV        GATAY+ +EP   HG     S  L++ GI +V +G  +P   + G+    LR  G++V      ++  + EE    C  +N    H   ++ P+ + KYAMT D            GKIA  SG + WI+ +++R RV   R +  A++VG +TV  DNP L
Sbjct:   31 GWTNPNPLVGCVIVKN-GEIVAEGYHEKIGGWHAERNAVLHCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVEV------VEGLLKEE----CDALNPIFFHYIQTKRPYVLMKYAMTAD------------GKIATGSGESKWITGESARARVQQTRHQYSAIMVGVDTVLADNPML 216          
BLAST of CB290445 vs. ExPASy Swiss-Prot
Match: RIBD_HAEIN (Riboflavin biosynthesis protein ribD OS=Haemophilus influenzae GN=ribD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.607e-18
Identity = 58/207 (28.02%), Postives = 104/207 (50.24%), Query Frame = 2
Query:  164 TSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHG-DHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRL 781
            T+P+P+ GC++  + G++ GEG+ +  G   AE  A+   G   +GATAY+ +EP   +G        L++AG+ +V+  +++P   + G+ ++ L   G+      E   + + ++A K    +N   + R    +PF   K AM+LD            G+ A +SG + WI+   +R  V  +R +S A++    TV  D+P L
Sbjct:   26 TTPNPSVGCVLVKN-GEIVGEGFHFKAGQPHAERVALAQAGENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGI------ESTVNLLNDQAEK----INKGFLKRMRQGMPFVQLKLAMSLD------------GRTAMASGESKWITGPDARSDVQKMRAKSSALLSTSTTVIADDPSL 209          
BLAST of CB290445 vs. ExPASy Swiss-Prot
Match: RIBD_BACSU (Riboflavin biosynthesis protein ribD OS=Bacillus subtilis GN=ribD PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 58/210 (27.62%), Postives = 100/210 (47.62%), Query Frame = 2
Query:  158 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLT 784
            G T  +P  G ++    G++ G G     G   AEV A+   G+   GA  Y+ +EP   +G     + L+  +GI RV V +R+P   + G+ +  ++  G++V       +  + ++A +    +N   +H   + +P+   K A +LD            GKIA S+G + WI+S+ +R      R    +++VG  TV+ DNP LT
Sbjct:   18 GQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVR------EGILADQAER----LNEKFLHFMRTGLPYVTLKAAASLD------------GKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLT 204          
BLAST of CB290445 vs. ExPASy Swiss-Prot
Match: RIBD_MYCTU (Riboflavin biosynthesis protein ribD OS=Mycobacterium tuberculosis GN=ribD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.723e-16
Identity = 64/212 (30.19%), Postives = 99/212 (46.70%), Query Frame = 2
Query:  158 GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVH--VLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLT 784
            G T P P  G +I    G++ G G     G   AEV A+   G    GA   + MEP + +G     V+AL++A +  VV  + +P   + G     L + GLQV   VL E + +  + E            +H+  + +P   +KYA ++D            G+ AA+ G + WISS+ +R  +   R  +DA++VG  TV  D+P LT
Sbjct:   25 GTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRAGGLAAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADP-NGIAGGGAGRLSAAGLQVRSGVLAEQVAAGPLRE-----------WLHKQRTGLPHVTWKYATSID------------GRSAAADGSSQWISSEAARLDLHRRRAIADAILVGTGTVLADDPALT 212          
BLAST of CB290445 vs. ExPASy Swiss-Prot
Match: RIBD_CHLTR (Riboflavin biosynthesis protein ribD OS=Chlamydia trachomatis GN=ribD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.056e-16
Identity = 67/211 (31.75%), Postives = 104/211 (49.29%), Query Frame = 2
Query:  161 FTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHT--AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLT 784
            F  P+P  GC+I  + G V GEG+    G+  AEV AV+       GA  ++ +EP  CH   T   V  L+++ +  V VG+ +P   +  + V  L++ G+ V+V +G        +EA+ S      P +++    +P+ V K A +LD            G+ A   G + WIS + +R  V  LR  S A++VG  TV  DNPRL+
Sbjct:   25 FAPPNPWVGCVIVKN-GCVIGEGWHQGIGSPHAEVCAVQDQKCSLEGAEVFVTLEPC-CHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVGVGS-------QEAKTSL----QPYLYQRERGLPWVVMKTAASLD------------GQTADRGGSSQWISGELARADVGKLRAESQAIIVGARTVCLDNPRLS 210          
BLAST of CB290445 vs. ExPASy Swiss-Prot
Match: RIBD_CHLPN (Riboflavin biosynthesis protein ribD OS=Chlamydia pneumoniae GN=ribD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.795e-15
Identity = 60/207 (28.99%), Postives = 101/207 (48.79%), Query Frame = 2
Query:  170 PHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGD-HTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLT 784
            P+P  GC++     ++ GEG+    G   AE  A++       G+  Y+++EP    G      + L++  ++RV V + +P   + GQ +  LR  G+QV+V +GE        EA+ S      P +++ T   P+++ K A ++D            G++A S G + WI+   +R  V  LR  S A++VG  TV  D+P LT
Sbjct:   28 PNPWVGCVVVQEN-RIIGEGFHAYAGGPHAEELAIQNASMPISGSDVYVSLEPCSHFGSCPPCANLLIKHKVSRVFVALVDPDPKVAGQGIAMLRQAGIQVYVGIGES-------EAQASL----QPYLYQRTHNFPWTILKSAASVD------------GQVADSQGKSQWITCPEARHDVGKLRAESQAILVGSRTVLSDDPWLT 210          
The following BLAST results are available for this feature:
BLAST of CB290445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RIBD_SYNY33.153e-2835.71Riboflavin biosynthesis protein ribD OS=Synechocys... [more]
RIBD_AQUAE2.585e-2234.74Riboflavin biosynthesis protein ribD OS=Aquifex ae... [more]
RIBD_ECOLI5.391e-2031.73Riboflavin biosynthesis protein ribD OS=Escherichi... [more]
RIBD_BUCBP5.391e-2030.77Riboflavin biosynthesis protein ribD OS=Buchnera a... [more]
RIBD_ACTPL5.391e-2033.49Riboflavin biosynthesis protein ribD OS=Actinobaci... [more]
RIBD_HAEIN8.607e-1828.02Riboflavin biosynthesis protein ribD OS=Haemophilu... [more]
RIBD_BACSU2.120e-1627.62Riboflavin biosynthesis protein ribD OS=Bacillus s... [more]
RIBD_MYCTU4.723e-1630.19Riboflavin biosynthesis protein ribD OS=Mycobacter... [more]
RIBD_CHLTR8.056e-1631.75Riboflavin biosynthesis protein ribD OS=Chlamydia ... [more]
RIBD_CHLPN1.795e-1528.99Riboflavin biosynthesis protein ribD OS=Chlamydia ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01be08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01be08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290445 ID=CB290445; Name=CB290445; organism=Citrus sinensis; type=EST; length=786bp
GCACGTGGGGTTTCCTCAAAATCTAAAAGATCAAAAGGGCAAAAAAGAAA
TGGCACCCTCTCTAGTAGCCAATTCCGCTCCGGTATTCTGCAAATTCAGC
CGCGCAGAAGACGCTGCGTACATCCGACGCGCCGCCGATATAGCTGACAA
GTCTGCTGGTTTCACATCCCCGCACCCGAATTTCGGCTGCTTGATTGCCA
CCTCAACCGGGAAGGTTGCAGGAGAGGGCTACTTGTACGCGCAGGGTACC
AAACCCGCGGAGGTGCAGGCAGTGGAAGCCGGCGGCTCTTTTTGCAGAGG
CGCCACCGCGTATCTGAACATGGAGCCCGGTGATTGCCACGGTGACCACA
CTGCTGTTTCTGCTCTTGTTCAGGCAGGAATTACAAGAGTTGTTGTTGGA
ATCAGGAATCCTTTGCAGCATCTTAGAGGCCAAGCTGTACGTGCATTAAG
AAGTCAAGGGCTGCAGGTTCATGTTCTTGGAGAGGATTTACAAAGTAAAA
TTATTGAGGAAGCTCGAAAATCTTGCCTCCTTGTCAATGCTCCTTTGATT
CATCGAGCTACTTCTCGAGTTCCCTTTTCTGTTTTCAAGTATGCTATGAC
CCTTGATGTCATCCTCCCTGGTGTACTTTCCTGGATGCTAACAGGAAAAA
TTGCTGCAAGTAGTGGACATGCAGCGTGGATAAGTAGCAAAACGTCTAGA
GACCGAGTTTTTGATTTGCGGGGTAGAAGTGATGCAGTTGTAGTTGGGGG
AAATACAGTTCGCAGGGATAATCCACGGCTAACTGC
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