CB290448

Overview
NameCB290448
Unique NameCB290448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB290448 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.808e-40
Identity = 85/170 (50.00%), Postives = 103/170 (60.59%), Query Frame = -3 
Query:   39 KTEGGFFFPFPVQKNPQPGEVVAFGEGKTVGKTKLDIFVKPGAQVFFFNYPGTELEFNGANLFFFREEGVFGIFEPEEIKVFKPLNPRVFIKVSEXXXXXXXXXXXXXASKEKPSPGMVIAVGPGPFDEEGNRKPFSFVPGNRGMFSKFPGKDFKGRDGPNSIALRVFEV 548
            KT GG   P   Q  PQ GEVVA GEG+T+GK K+DI V  GAQ+ +  Y GTE+EFN       +E+ + GI E E+IK  KPLN RVFIKV+E              +KEKPS G VIAVGPG  DEEG   P     G+  ++SK+ G DFKG+DG N IALR  +V
Sbjct:   79 KTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDV 248
[Close]
BLAST of CB290448 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.431e-38
Identity = 80/170 (47.06%), Postives = 103/170 (60.59%), Query Frame = -3 
Query:   39 KTEGGFFFPFPVQKNPQPGEVVAFGEGKTVGKTKLDIFVKPGAQVFFFNYPGTELEFNGANLFFFREEGVFGIFEPEEIKVFKPLNPRVFIKVSEXXXXXXXXXXXXXASKEKPSPGMVIAVGPGPFDEEGNRKPFSFVPGNRGMFSKFPGKDFKGRDGPNSIALRVFEV 548
            KT  G F P   QK PQ GEVVA G GK VG  KL + VK GA+V +  Y GTE+E +G++    +E+ + GI E +++K  KPLN R+ IKV+E             +SKEKPS G V+A GPG  DEEGNR P     GN  ++SK+ G DFKG DG + + LRV +V
Sbjct:   81 KTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSDYMVLRVSDV 250
The following BLAST results are available for this feature:
BLAST of CB290448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CH10C_ARATH1.808e-4050.0020 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL6.431e-3847.0620 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01be10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01be10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290448 ID=CB290448; Name=CB290448; organism=Citrus sinensis; type=EST; length=550bp
CCCCAAGTAAACACAAACAAATAAAAAACCCCACCCCTCACTTCAAAAAC
TCTTAAAGCAATGGAGTTGGGACCATCCCTGCCCTTGAAGTCTTTCCCTG
GAAACTTGGAAAACATCCCCCTGTTCCCTGGAACAAAGGAAAAAGGTTTC
CTATTACCTTCCTCATCAAAAGGACCGGGGCCAACAGCAATGACCATTCC
AGGGGAAGGTTTCTCCTTGCTTGCCCCCGCAAAAAAAAAACCTCCAGCAG
TTGTCCCCCCACCCTCAGAAACCTTGATGAAAACTCTGGGATTAAGGGGC
TTAAAAACCTTGATTTCCTCTGGTTCAAAAATGCCAAATACGCCCTCCTC
CCTAAAAAAGAAAAGATTTGCCCCATTGAACTCCAACTCAGTCCCTGGAT
AATTAAAAAAAAAGACCTGGGCCCCAGGCTTCACAAAAATGTCCAGTTTA
GTTTTCCCAACTGTTTTCCCCTCGCCAAAAGCTACCACCTCACCTGGTTG
AGGGTTTTTTTGAACTGGAAAAGGAAAAAAAAAACCCCCCTCCGTTTTCC
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