CB290514

Overview
NameCB290514
Unique NameCB290514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290514 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.779e-33
Identity = 73/129 (56.59%), Postives = 86/129 (66.67%), Query Frame = -3
Query:  238 LQKRVGITAGISLLIETNPEKKGARYEATYSFYFGDYGPIAVQGPYLPYEALYLAVTGESAIFEGVYGQVKLHQLVFPFKLFYPFYLKAIKA-FPKVLLGNXXXXXXXXXXXXXXXPWELGAPIANFLN 621
            L KR+GITAG+ +LI+  PEKKG R+EA+YSFYFGDYG I+VQGPYL YE  +LA+TG S +FEG YGQVKL QLV+P KLFY FYLK + A  P  L G                  + GA IANF N
Sbjct:  126 LTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAADLPVELTGKHVEPSKEVKPAAEAQATQPGATIANFTN 254          
BLAST of CB290514 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.425e-31
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = -3
Query:  352 LQKRVGITAGISLLIETNPEKKGARYEATYSFYFGDYGPIAVQGPYLPYEALYLAVTGESAIFEGVYGQVKLHQLVFPFKLFYPFYLKAI 621
            L+KRVGITAG+ ++IE  PEKKG R+EATYSFYFGDYG ++VQGPYL YE  +LA+TG + IFEG YGQVKL QLV+P KLFY FYLK +
Sbjct:  125 LKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGL 214          
BLAST of CB290514 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.301e-30
Identity = 65/100 (65.00%), Postives = 78/100 (78.00%), Query Frame = -3
Query:  325 LQKRVGITAGISLLIETNPEKKGARYEATYSFYFGDYGPIAVQGPYLPYEALYLAVTGESAIFEGVYGQVKLHQLVFPFKLFYPFYLKAI-KAFPKVLLG 621
            L+KRVGITAG+ ++IE  PEK G R+EATYSFYFGDYG ++VQGPYL YE  +LA+TG + IFEG YGQVKL QLV+P KLFY FYLK +    P  L+G
Sbjct:  126 LKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIG 225          
BLAST of CB290514 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.945e-30
Identity = 70/129 (54.26%), Postives = 82/129 (63.57%), Query Frame = -3
Query:  238 LQKRVGITAGISLLIETNPEKKGARYEATYSFYFGDYGPIAVQGPYLPYEALYLAVTGESAIFEGVYGQVKLHQLVFPFKLFYPFYLKAI-KAFPKVLLGNXXXXXXXXXXXXXXXPWELGAPIANFLN 621
            L+KRVGITAG+ +LI+  PEK G R+EA+YSFYFGDYG ++VQG YL YE  +LAVTG S IFEG YGQVKL QLV+P KLFY FYLK +    P  L G                  E    I+NF N
Sbjct:  130 LKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKDVKPAPEAKAMEPSGVISNFTN 258          
The following BLAST results are available for this feature:
BLAST of CB290514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC4_ARATH4.779e-3356.59Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH3.425e-3170.00Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC1_ARATH1.301e-3065.00Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
AOC3_ARATH4.945e-3054.26Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290514 ID=CB290514; Name=CB290514; organism=Citrus sinensis; type=EST; length=623bp
TGGGAGGTTGAGACCCCCTTTAAACAAAAGTTGCCCTCAAAAGCTACCCC
CAGAGAGCAAAAAAGAGAGCCAAACGTTGGTGACAAAACCCCCAAAAAAA
AAAAAACAACCACCTCCCCCCTTGGTTTTTGGGCATCTCCATCTTCATTA
TCATATCACTAAAGCCAATATGTTTGCACCCATTATTCACTTGAATAAAA
AACAACCCAATTAAAGATGGCCTCATATCCCTAACTAATTAAGGAAATTG
GCAATGGGTGCCCCAAGCTCCCAAGGCTTAACAGCAGGGGGGGGGTCAAA
ACCAGGGGGGGGATCCACCGGGTTCCCCAAAAGCACTTTTGGGAAGGCCT
TAATGGCCTTCAAATAAAAGGGGTAAAACAGCTTAAAAGGAAACACAAGT
TGGTGGAGCTTAACCTGGCCATACACTCCCTCGAAGATGGCGGATTCACC
AGTCACAGCCAAATAAAGGGCCTCATAGGGCAAATACGGGCCTTGGACAG
CTATGGGACCATAGTCTCCAAAGTAAAAGCTGTAAGTTGCTTCATATCGG
GCACCTTTCTTTTCTGGGTTGGTTTCGATCAAAAGGGATATACCCGCTGT
TATTCCCACCCTCTTTTGGAGGG
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