CB290533

Overview
NameCB290533
Unique NameCB290533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290533_ssr107 microsatellite CB290533_ssr107:107..118. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5821 contig Csv1_Contig5821:74..928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 364.385 bits (934), Expect = 4.621e-100
Identity = 188/282 (66.67%), Postives = 215/282 (76.24%), Query Frame = 2
Query:   29 MAFKHLLTLARRSHR-------PSSTALFTAIRXXXXXXXXXXXXXXXXXXXXXXNVMIYDRLAEAVKAKLKNLENPDPKFLKYGSPHPTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA 853
            MA K+LL+LARRS R         S++ F+AI                       ++M YD  AE +K K+K LENPD +FLKY SPHP L SH HIL+APET++TTLPNGLRVATESNL+AKTATVGVWIDAGSRFE+DETNGTAHFLEHMIFKGT++RT R LEEEIE++GGHLNAYTSREQTTYYAKVLD +VN ALD+LADILQNS F++ RI RERDVILR           V+ DHLHATAFQYTPLGRTILGPAQN+K+IT+E LQNYI THYTA
Sbjct:    1 MAMKNLLSLARRSQRRLFLTQATRSSSSFSAI------DSVPASASPTALSPPPPHLMPYDHAAEIIKNKIKKLENPDKRFLKYASPHPILASHNHILSAPETRVTTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRALEEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRINRERDVILREMQEVEGQTDEVVLDHLHATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTA 276          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.523e-61
Identity = 127/220 (57.73%), Postives = 156/220 (70.91%), Query Frame = 2
Query:  194 LAEAVKAKLKNLENPDPKFLKYGSPHPTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA 853
            LA+ VKA+   + NP  + L   +PH    S T I    +T+ TTL NGL VA++ +  A+T+TVG+WIDAGSR ETDETNGTAHFLEH+ FKGT KRT + LE EIENMG HLNAYTSRE T Y+AK L++DV   +DIL DILQNS  +++ I RERDVILR           V+FDHLHATA+Q+ PLGRTILGP +NI+ IT+  L NYI  +YTA
Sbjct:   10 LAQGVKARAGGVINPFRRGL--ATPH----SGTGI----KTQTTTLKNGLTVASQYSPYAQTSTVGMWIDAGSRAETDETNGTAHFLEHLAFKGTTKRTQQQLELEIENMGAHLNAYTSRENTVYFAKALNEDVPKCVDILQDILQNSKLEESAIERERDVILRESEEVEKQLEEVVFDHLHATAYQHQPLGRTILGPRENIRDITRTELVNYIKNNYTA 219          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 1.360e-59
Identity = 115/184 (62.50%), Postives = 139/184 (75.54%), Query Frame = 2
Query:  296 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHY 847
            +L  PET++T L NGLRVA+E N    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I+++ L +YI THY
Sbjct:   52 VLNVPETQVTCLENGLRVASE-NSGISTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHY 234          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.030e-59
Identity = 115/184 (62.50%), Postives = 139/184 (75.54%), Query Frame = 2
Query:  296 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHY 847
            +L  PET++T L NGLRVA+E +  A T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I ++ L +YI THY
Sbjct:   53 VLNVPETRVTCLENGLRVASEDSGLA-TCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHY 235          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.958e-59
Identity = 114/184 (61.96%), Postives = 138/184 (75.00%), Query Frame = 2
Query:  296 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHY 847
            +L  PET++T L NGLRVA+E N    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   +D+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I ++ L +YI THY
Sbjct:   52 VLNVPETQVTCLENGLRVASE-NSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSRDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHY 234          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.169e-59
Identity = 117/182 (64.29%), Postives = 135/182 (74.18%), Query Frame = 2
Query:  308 PETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA 853
            P T+I+TL NGL VATES   A+TATVGVWIDAGSR ETD+TNGTAHFLEHM FKGT +R+   LE E+EN+G HLNAYTSREQT YYAK   KDV  A+DI++DILQNS  +   I RERDVILR           V+FDHLHA AFQ  PLGRTILGP  NI +I ++ L +YI T+YTA
Sbjct:   27 PFTEISTLSNGLTVATESQPHAQTATVGVWIDAGSRAETDKTNGTAHFLEHMAFKGTGRRSQHALELEVENIGAHLNAYTSREQTVYYAKSFSKDVPVAVDIISDILQNSKLESGAIERERDVILREQQEVDKQLEEVVFDHLHAVAFQGQPLGRTILGPKNNILSIQRDDLASYIQTNYTA 208          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.817e-59
Identity = 113/184 (61.41%), Postives = 139/184 (75.54%), Query Frame = 2
Query:  296 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHY 847
            +L  PET++T L +GLRVA+E +    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I+++ L +YI THY
Sbjct:   52 VLNVPETRVTCLESGLRVASEDS-GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHY 234          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 8.817e-59
Identity = 113/184 (61.41%), Postives = 139/184 (75.54%), Query Frame = 2
Query:  296 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHY 847
            +L  PET++T L +GLRVA+E +    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK   KD+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I+++ L +YI THY
Sbjct:   52 VLNVPETRVTCLESGLRVASEDS-GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHY 234          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: MPPB_BLAEM (Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.172e-57
Identity = 114/186 (61.29%), Postives = 133/186 (71.51%), Query Frame = 2
Query:  296 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA 853
            +L  P+T++T LPNGL VATESN A  TATVGVWID+GSR ET   NG AHFLEH+ FKGT++RT   LE EIENMGGHLNAYTSREQT YYAK+  +DV   ++IL DILQNST D   I RER VILR           V+FDHLHA AF    LG TILGP +NI+T+++  LQ YI  +YTA
Sbjct:   29 LLNVPKTQVTRLPNGLTVATESNPALATATVGVWIDSGSRAETKANNGVAHFLEHISFKGTKQRTQSGLEIEIENMGGHLNAYTSREQTVYYAKLFSQDVAKGVNILGDILQNSTLDPGAIDRERAVILREAEEVDKQVEEVVFDHLHAAAFPENALGYTILGPKENIQTLSQADLQAYIKNNYTA 214          
BLAST of CB290533 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.914e-55
Identity = 109/188 (57.98%), Postives = 139/188 (73.94%), Query Frame = 2
Query:  290 THILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKR-TARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYT 850
            +++  +PETKITTL NG+RVATE     + A+VGVW+D+GS +ETD+ NG AHFLEHMIFKGT KR T + +E EIENMGG LNA+TSRE + YY KVL  +V NA+DIL+DILQNS F+ + I +ERD IL            V+FD LHA AFQ + LGRTILGP +NIK+IT+E +Q +I+ +YT
Sbjct:   27 SYLKISPETKITTLSNGIRVATEQTYG-EVASVGVWVDSGSVYETDKNNGVAHFLEHMIFKGTAKRPTPQSIETEIENMGGSLNAFTSREHSAYYMKVLKDNVPNAVDILSDILQNSKFETSLIEQERDTILSENDYIQSKEDEVVFDQLHAAAFQGSALGRTILGPVENIKSITREQIQEFINENYT 213          
The following BLAST results are available for this feature:
BLAST of CB290533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
MPPB_ARATH4.621e-10066.67Probable mitochondrial-processing peptidase subuni... [more]
MPPB_NEUCR5.523e-6157.73Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_RAT1.360e-5962.50Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BOVIN3.030e-5962.50Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_MOUSE3.958e-5961.96Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_LENED5.169e-5964.29Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_PONAB8.817e-5961.41Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN8.817e-5961.41Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BLAEM2.172e-5761.29Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_DICDI5.914e-5557.98Mitochondrial-processing peptidase subunit beta OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ca12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ca12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290533 ID=CB290533; Name=CB290533; organism=Citrus sinensis; type=EST; length=855bp
GCACTAGGATCATCAGTGAGTCCAAACGATGGCGTTTAAGCATCTTTTAA
CCCTAGCTCGCCGGTCTCACAGGCCTTCGTCCACGGCCCTCTTTACCGCC
ATCCGATCCTCCTCCTCCGCCTCACCCCTCGCCACGTCACCATCGTCTCC
GCCGCCGTCCCCGCCTCCCCCAAATGTCATGATCTACGACCGTCTCGCCG
AAGCCGTCAAAGCCAAGCTCAAAAACCTAGAAAACCCCGACCCGAAGTTC
TTAAAGTACGGATCCCCGCACCCGACCCTTACTTCCCACACGCACATCCT
CGCCGCGCCGGAGACCAAAATCACGACTTTGCCTAACGGACTCCGCGTCG
CCACCGAGTCGAACCTCGCCGCGAAGACGGCCACAGTTGGAGTTTGGATT
GACGCCGGCTCGAGGTTCGAGACTGATGAGACGAACGGGACGGCTCATTT
CTTGGAGCATATGATATTCAAGGGGACGGAGAAGCGGACTGCGAGAGATT
TGGAGGAGGAGATCGAGAATATGGGGGGGCATTTGAATGCTTACACTAGC
AGGGAACAGACGACCTATTATGCCAAGGTGTTGGATAAGGATGTGAATAA
TGCTTTGGATATTTTGGCTGATATTTTGCAGAACTCGACGTTTGATCAAG
CGAGGATCACCAGGGAACGGGATGTTATTTTGAGAGAAATGGAGGAGGTT
GAGGGGCAAACAGAGGAAGTCATTTTTGATCATTTGCATGCAACTGCATT
CCAGTACACTCCTTTGGGGAGAACTATTCTCGGTCCTGCTCAGAATATCA
AGACAATCACAAAAGAACATCTGCAGAACTATATTCACACTCACTATACT
GCTCC
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