CB290559

Overview
NameCB290559
Unique NameCB290559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10775 contig Csv1_Contig10775:1244..2057. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290559 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 380.563 bits (976), Expect = 5.811e-105
Identity = 184/218 (84.40%), Postives = 200/218 (91.74%), Query Frame = -2
Query:  160 KKGAIVCIDGTFATPLNQKALSLGADLVLHFATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 813
            K+G +VCIDGTFATPLNQKAL+LGADLV+H ATK+IGGHNDVLAG I GS KLV++IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQNSTA RMAEILEAHPKV  V+YPGL SHPEH +A +QMTGFGGVVSFE+DGD+  TIKF+D+LKIPYIAPSFGGCESIVDQPAIMSYWDL Q ERLKYGI DNLVRFSFGVEDFED+KAD+LQAL AI
Sbjct:  346 KRGTLVCIDGTFATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSEIRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVSHVYYPGLPSHPEHELAKRQMTGFGGVVSFEIDGDIETTIKFVDSLKIPYIAPSFGGCESIVDQPAIMSYWDLPQEERLKYGIKDNLVRFSFGVEDFEDVKADILQALEAI 563          
BLAST of CB290559 vs. ExPASy Swiss-Prot
Match: METC_COXBU (Cystathionine beta-lyase OS=Coxiella burnetii GN=metC PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.241e-47
Identity = 93/217 (42.86%), Postives = 144/217 (66.36%), Query Frame = -2
Query:  169 KKGAIVCIDGTFATPLNQKALSLGADLVLHFATKFIGGHNDVLAG-SISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 813
            +K  I   D TFATP+ Q+ L LG D+V H ATK++ GH+D++ G ++ G  K L  Q++ L + +G    P  +++++RG+KTL +R+++    A+++A+ LE HPKVKRV+YPGL SHP+H IA +QM  FGG++S E+  DL  T K ++  ++  +A S GG ES+++ PAIM++  + Q+ER K GI D  +R S G+E   DL+ D+  AL
Sbjct:  171 EKNIIAVADNTFATPIIQRPLELGFDIVTHSATKYLNGHSDIIGGVAVVGDNKTLAEQLKYLQNAIGAIAAPFDSFMVLRGLKTLAIRMERHCENAMQLAQWLEKHPKVKRVYYPGLPSHPQHSIAKKQMRYFGGMISVELKCDLNETKKVLERCQLFTLAESLGGVESLIEHPAIMTHASIPQAERQKLGITDGFIRLSVGIEAITDLRHDLEAAL 387          
BLAST of CB290559 vs. ExPASy Swiss-Prot
Match: CGL_DICDI (Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.231e-46
Identity = 89/215 (41.40%), Postives = 138/215 (64.19%), Query Frame = -2
Query:  169 KGAIVCIDGTFATPLNQKALSLGADLVLHFATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 810
            +GA + +D TF +P  Q  L LGAD+V+H  TK+I GH+D + G ++  + +L  +++ L + +G   +P   +L +RG+KTLH+R++     A  +   LE HPKV+RV YPGL SHP+H I  +QM G+GG+V F V G +  +  F++ +K+  +A S GG ES+++ P++M++  +   ER K GI D L+R S G+ED  DL AD+ QAL
Sbjct:  170 RGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYINGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHASVPAEERAKLGISDTLIRLSVGIEDINDLLADISQAL 384          
BLAST of CB290559 vs. ExPASy Swiss-Prot
Match: MEGL_PSEPU (Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.608e-46
Identity = 99/219 (45.21%), Postives = 143/219 (65.30%), Query Frame = -2
Query:  163 KKGAIVCIDGTFATPLNQKALSLGADLVLHFATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 813
            K GA V +D T+ TP  Q+ L LGADLV+H ATK++ GH D+ AG + GS  LV +IR   L  + G  L+P+ A L++RG+KTL+LR+ +  + A  +AE L   P+V+ +HYPGL S P++ +A QQM+  GG+++FE+ G + A  +F++AL++   A S G  ES+   PA M++   +  ER  YGI + LVR S G+ED +DL ADV QAL A
Sbjct:  178 KHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396          
BLAST of CB290559 vs. ExPASy Swiss-Prot
Match: METC_LACLM (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.112e-46
Identity = 94/213 (44.13%), Postives = 143/213 (67.14%), Query Frame = -2
Query:  169 AIVCIDGTFATPLNQKALSLGADLVLHFATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 804
            A+  +D TFATP  Q+ ++LGAD+VLH ATK++GGH+DV+AG ++ + K L ++I  L + +G  L P  ++L+ RG+KTL LR++  ++ A ++AE LE    V +V+YPGL SHP H IA +QM+ FGG++SFE+  D  A   F++ L    +A S GG ES+++ PA+M++  + +  R + GI D L+R S GVE  EDL  D+ +AL
Sbjct:  166 ALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELT-DENAVKDFVENLSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEAL 377          
BLAST of CB290559 vs. ExPASy Swiss-Prot
Match: METC_LACLA (Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis GN=metC PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.112e-46
Identity = 94/213 (44.13%), Postives = 143/213 (67.14%), Query Frame = -2
Query:  169 AIVCIDGTFATPLNQKALSLGADLVLHFATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 804
            A+  +D TFATP  Q+ ++LGAD+VLH ATK++GGH+DV+AG ++ + K L ++I  L + +G  L P  ++L+ RG+KTL LR++  ++ A ++AE LE    V +V+YPGL SHP H IA +QM+ FGG++SFE+  D  A   F++ L    +A S GG ES+++ PA+M++  + +  R + GI D L+R S GVE  EDL  D+ +AL
Sbjct:  166 ALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELT-DENAVKDFVENLSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEAL 377          
BLAST of CB290559 vs. ExPASy Swiss-Prot
Match: METB_HELPY (Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.961e-45
Identity = 94/217 (43.32%), Postives = 140/217 (64.52%), Query Frame = -2
Query:  160 GAIVCIDGTFATPLNQKALSLGADLVLHFATKFIGGHNDVLAGSISGSGKLVTQ-IRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 807
            G +  +D TFATP  Q  L LGAD+V H  TK++GGH+DV+AG ++ + + + Q I    + +GG L P  ++L+ RG+KTL LR++     AL +AE LE HPKV+RV+YPGL +HP + +A +QM GF G++SF +  D  A + F+++LK+  +  S GG ES+V  PA M++  + +++R   GI D LVR S G+E  +DL  D+ QA   I
Sbjct:  164 GLLTIVDNTFATPYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSGMLSFTLKNDSEA-VAFVESLKLFILGESLGGVESLVGIPAFMTHACIPKTQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKI 379          
BLAST of CB290559 vs. ExPASy Swiss-Prot
Match: METZ_PSEAE (O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa GN=metZ PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.505e-44
Identity = 88/217 (40.55%), Postives = 140/217 (64.52%), Query Frame = -2
Query:  160 KGAIVCIDGTFATPLNQKALSLGADLVLHFATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 810
            KGA++ +D  F TP  Q+ L LGAD+V+H ATK+I G    + G ++G G+ + ++       G  L+P  A+L ++G++TL +R+Q  +++AL +AE LE  P ++RV+Y GL SHP+H +A +Q +GFG VVSF+V G   A  +FIDA ++  I  + G  ++ +  PA  S+  LS  +R + GI D+L+R + G+ED +DLKAD+ + L A+
Sbjct:  187 KGALLAVDNCFCTPALQQPLKLGADVVIHSATKYIDGQGRGMGGVVAGRGEQMKEVVGFLRTAGPTLSPFNAWLFLKGLETLRIRMQAHSASALALAEWLERQPGIERVYYAGLPSHPQHELARRQQSGFGAVVSFDVKGGRDAAWRFIDATRMVSITTNLGDTKTTIAHPATTSHGRLSPEDRARAGIGDSLIRVAVGLEDLDDLKADMARGLAAL 403          
BLAST of CB290559 vs. ExPASy Swiss-Prot
Match: METC_LACLC (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.505e-44
Identity = 93/213 (43.66%), Postives = 142/213 (66.67%), Query Frame = -2
Query:  169 AIVCIDGTFATPLNQKALSLGADLVLHFATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 804
            A+  +D TFATP  Q+ ++LGAD+VLH ATK++GGH+DV+AG ++  S +L  +I  L + +G  L P  ++L+ RG+KTL  R++  ++ A ++AE LEA   V +V+YPGL +H  H IA +QMT FGG++SFE+  D  A   F++ L+   +A S GG ES+++ PA+M++  + +  R + GI D L+R S GVE  EDL  D+ +AL
Sbjct:  166 ALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSNELAIEIGFLQNSIGAVLGPQDSWLVQRGIKTLAPRMEAHSANAQKIAEFLEASQAVSKVYYPGLVNHEGHEIAKKQMTAFGGMISFELT-DENAVKNFVENLRYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEALEDLLTDLKEAL 377          
BLAST of CB290559 vs. ExPASy Swiss-Prot
Match: MCCB_BACSU (Cystathionine gamma-lyase OS=Bacillus subtilis GN=mccB PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.380e-44
Identity = 92/219 (42.01%), Postives = 140/219 (63.93%), Query Frame = -2
Query:  160 KKGAIVCIDGTFATPLNQKALSLGADLVLHFATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 813
            K G ++ +D TF TP  Q+ L+LGAD+VLH ATK++GGH+DV+ G + + S +L  ++  + +  GG L P  ++L++RG+KTL LR++  +  A ++A  LE HP V+ ++YPG  +HP H +A  Q  GFGG++SF++ G       F+  LK+  IA S G  ES++  PA M++  + +  RL+ GI D L+R S G+ED EDL  D+ QAL  I
Sbjct:  162 KAGVLLIVDNTFNTPYFQQPLTLGADIVLHSATKYLGGHSDVVGGLVVTASKELGEELHFVQNSTGGVLGPQDSWLLMRGIKTLGLRMEAIDQNARKIASFLENHPAVQTLYYPGSSNHPGHELAKTQGAGFGGMISFDI-GSEERVDAFLGNLKLFTIAESLGAVESLISVPARMTHASIPRERRLELGITDGLIRISVGIEDAEDLLEDIGQALENI 379          
The following BLAST results are available for this feature:
BLAST of CB290559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
METB_ARATH5.811e-10584.40Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
METC_COXBU3.241e-4742.86Cystathionine beta-lyase OS=Coxiella burnetii GN=m... [more]
CGL_DICDI1.231e-4641.40Cystathionine gamma-lyase OS=Dictyostelium discoid... [more]
MEGL_PSEPU1.608e-4645.21Methionine gamma-lyase OS=Pseudomonas putida GN=md... [more]
METC_LACLM6.112e-4644.13Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_LACLA6.112e-4644.13Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METB_HELPY3.961e-4543.32Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
METZ_PSEAE1.505e-4440.55O-succinylhomoserine sulfhydrylase OS=Pseudomonas ... [more]
METC_LACLC1.505e-4443.66Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
MCCB_BACSU4.380e-4442.01Cystathionine gamma-lyase OS=Bacillus subtilis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01cc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01cc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290559 ID=CB290559; Name=CB290559; organism=Citrus sinensis; type=EST; length=814bp
TTTTTTTTTTTTTTTTTAGATGAAGTTTTAAGATTATTCAAGGCCTTATT
GTCACTAAAACATAATAACAAAACGAACATATTCAAACATCAAAAGAGAA
TGCCGTTAGGAAAAGTAAAATGAAAATTTTGCGAAGGTGAAACACAAAAA
ACACTTCTATATGGCATGCAGGGCCTGAAGTACATCTGCCTTCAAATCTT
CAAAATCTTCCACTCCAAAGCTAAAGCGAACCAAGTTATCCATAATCCCA
TACTTGAGCCTCTCCGATTGGCTAAGGTCCCAATACGACATTATAGCTGG
CTGATCAACAATGCTCTCACAGCCACCGAAGGATGGAGCAATATATGGGA
TTTTCAAGGCATCAATAAATTTTATGGTGGCCGTTAGGTCTCCATCCACC
TCAAAACTAACTACCCCACCAAAACCAGTCATTTGCTGTGTGGCAATGTG
ATGCTCAGGATGACTCTTCAAGCCTGGATAGTGAACGCGCTTCACCTTTG
GATGTGCCTCTAAAATCTCGGCCATCCTCAACGCAGTTGAATTTTGTTGC
TGTACACGAAGATGCAATGTCTTCATGCCTCGAATGATCAAATATGCGGC
ATTCGGGTTGAGAGCACCACCCAAAACATGATGCAAATTACGAATTTGTG
TAACTAACTTCCCTGAACCACTAATGCTCCCAGCAAGGACATCATTGTGG
CCACCAATGAATTTTGTTGCAAAGTGCAGGACAAGATCAGCACCAAGGCT
GAGGGCCTTCTGATTGAGAGGTGTGGCAAAGGTTCCATCTATGCAAACTA
TTGCTCCTTTCTTA
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